Variant report

Variant	rs13158025
Chromosome Location	chr5:147034365-147034366
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10452517	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10452518	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10452530	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1159523	0.80[AFR][1000 genomes]
rs12657682	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12658788	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12658834	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13162410	0.99[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1347137	0.87[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs1347138	0.86[AFR][1000 genomes]
rs1347139	0.89[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs1347140	0.86[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs17106977	0.85[ASN][1000 genomes]
rs17107043	0.84[AFR][1000 genomes]
rs2053051	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2116766	0.81[AFR][1000 genomes]
rs34147729	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35246628	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35416673	0.94[AFR][1000 genomes]
rs35542336	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4147461	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4147462	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4147463	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4147464	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4489050	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4705188	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6859329	0.94[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs6860455	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6862046	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6883287	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6887481	0.84[AFR][1000 genomes]
rs6896560	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73268170	0.88[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs73268172	0.86[AFR][1000 genomes]
rs7709287	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7735403	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9325048	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:146957800-147038000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr5:147009800-147051200	Weak transcription	Fetal Muscle Trunk	muscle
3	chr5:147013000-147038400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr5:147015400-147050000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr5:147016400-147052400	Weak transcription	Primary B cells from cord blood	blood
6	chr5:147016600-147037400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr5:147016600-147037800	Weak transcription	Fetal Stomach	stomach
8	chr5:147016600-147038200	Weak transcription	Brain Angular Gyrus	brain
9	chr5:147016600-147047400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr5:147020000-147037000	Weak transcription	Fetal Brain Male	brain
11	chr5:147021400-147037200	Weak transcription	Fetal Brain Female	brain
12	chr5:147021400-147042800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr5:147022800-147037600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr5:147023200-147037600	Weak transcription	Thymus	Thymus
15	chr5:147023200-147037800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
16	chr5:147023400-147036800	Weak transcription	Brain Germinal Matrix	brain
17	chr5:147023800-147037400	Weak transcription	Fetal Lung	lung
18	chr5:147024200-147038400	Weak transcription	Brain Cingulate Gyrus	brain
19	chr5:147024600-147035600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr5:147024600-147037800	Weak transcription	Brain Anterior Caudate	brain
21	chr5:147024800-147037600	Weak transcription	Primary T cells fromperipheralblood	blood
22	chr5:147025200-147041200	Weak transcription	Brain Hippocampus Middle	brain
23	chr5:147025200-147053000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
24	chr5:147025400-147034800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
25	chr5:147025400-147037400	Weak transcription	Brain Inferior Temporal Lobe	brain
26	chr5:147025400-147037400	Weak transcription	Fetal Thymus	thymus
27	chr5:147025400-147038200	Weak transcription	Brain Substantia Nigra	brain
28	chr5:147025400-147038400	Weak transcription	Stomach Smooth Muscle	stomach
29	chr5:147025400-147040400	Weak transcription	H9 Cell Line	embryonic stem cell
30	chr5:147027400-147038200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
31	chr5:147028600-147038200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
32	chr5:147028600-147038200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
33	chr5:147029000-147037600	Weak transcription	H1 Cell Line	embryonic stem cell
34	chr5:147029800-147038600	Weak transcription	HUES48 Cell Line	embryonic stem cell
35	chr5:147030000-147036400	Weak transcription	Cortex derived primary cultured neurospheres	brain
36	chr5:147030200-147037600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
37	chr5:147030200-147037600	Weak transcription	Primary T cells from cord blood	blood
38	chr5:147030400-147037000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr5:147030400-147037200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
40	chr5:147031200-147036800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
41	chr5:147033000-147037800	Weak transcription	HUES6 Cell Line	embryonic stem cell
42	chr5:147033000-147038200	Weak transcription	HUES64 Cell Line	embryonic stem cell
43	chr5:147033200-147035200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links