Variant report

Variant	rs10049367
Chromosome Location	chr3:83616901-83616902
allele	C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs13062745	0.87[ASN][1000 genomes]
rs1453727	0.81[EUR][1000 genomes]
rs1453732	0.87[ASN][1000 genomes]
rs2873634	0.81[EUR][1000 genomes]
rs4367082	0.83[EUR][1000 genomes]
rs59702218	0.82[EUR][1000 genomes]
rs73119472	0.80[ASN][1000 genomes]
rs9839870	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1006081	chr3:83421626-84262106	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv460739	chr3:83547435-83626697	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv525529	chr3:83579878-83625938	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:83616600-83617000	Enhancers	ES-I3 Cell Line	embryonic stem cell
2	chr3:83616600-83617000	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr3:83616600-83617600	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chr3:83616600-83617600	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr3:83616600-83618000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
6	chr3:83616600-83619600	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr3:83616800-83617000	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
8	chr3:83616800-83617000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr3:83616800-83617400	Active TSS	Cortex derived primary cultured neurospheres	brain
10	chr3:83616800-83619400	Enhancers	HUES48 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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