Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10049367	0.81[EUR][1000 genomes]
rs11127820	0.97[ASN][1000 genomes]
rs12496167	0.97[ASN][1000 genomes]
rs12497100	0.96[ASN][1000 genomes]
rs13074519	0.81[ASN][1000 genomes]
rs1453728	1.00[ASN][1000 genomes]
rs1453734	1.00[ASN][1000 genomes]
rs2045078	0.97[ASN][1000 genomes]
rs2045079	0.88[ASN][1000 genomes]
rs2056608	0.89[ASN][1000 genomes]
rs2873634	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35476325	0.98[ASN][1000 genomes]
rs4367082	0.83[EUR][1000 genomes]
rs59702218	0.82[EUR][1000 genomes]
rs60462424	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7643933	0.93[ASN][1000 genomes]
rs977878	0.94[ASN][1000 genomes]
rs978798	1.00[ASN][1000 genomes]
rs9839870	0.83[EUR][1000 genomes]
rs9853891	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1006081	chr3:83421626-84262106	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv460741	chr3:83626697-83867681	ZNF genes & repeats Weak transcription Enhancers Active TSS	lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv590811	chr3:83626697-83867681	Enhancers Active TSS ZNF genes & repeats Weak transcription	lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:83660600-83664600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr3:83660800-83661200	Enhancers	Pancreas	Pancrea

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