Variant report

Variant	rs2045079
Chromosome Location	chr3:83666759-83666760
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11127820	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12496167	0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12497100	0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13074519	0.86[EUR][1000 genomes]
rs1453727	0.88[ASN][1000 genomes]
rs1453728	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1453734	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2045078	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2056608	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2873634	0.88[ASN][1000 genomes]
rs35476325	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs60462424	0.83[ASN][1000 genomes]
rs7643933	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs977878	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs978798	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9853891	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1006081	chr3:83421626-84262106	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv460741	chr3:83626697-83867681	ZNF genes & repeats Weak transcription Enhancers Active TSS	lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv590811	chr3:83626697-83867681	Enhancers Active TSS ZNF genes & repeats Weak transcription	lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:83665200-83671200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr3:83666200-83667200	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr3:83666400-83666800	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr3:83666600-83667000	Enhancers	HUES64 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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