Variant report

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs11127820	0.89[EUR][1000 genomes]
rs12496167	0.92[EUR][1000 genomes]
rs12497100	0.91[EUR][1000 genomes]
rs12637780	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13062745	0.81[EUR][1000 genomes]
rs1377621	0.85[EUR][1000 genomes]
rs1377626	0.83[EUR][1000 genomes]
rs1453727	0.81[ASN][1000 genomes]
rs1453728	0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1453732	0.81[EUR][1000 genomes]
rs1453734	0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17175780	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2045078	0.92[EUR][1000 genomes]
rs2045079	0.86[EUR][1000 genomes]
rs2056608	0.82[EUR][1000 genomes]
rs2318135	0.85[EUR][1000 genomes]
rs2873634	0.81[ASN][1000 genomes]
rs3214002	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35476325	0.90[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs4374540	0.83[EUR][1000 genomes]
rs4605563	0.84[EUR][1000 genomes]
rs4856458	0.83[EUR][1000 genomes]
rs62257888	0.83[EUR][1000 genomes]
rs6548884	0.83[EUR][1000 genomes]
rs6548885	0.83[EUR][1000 genomes]
rs6785019	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7625312	0.84[EUR][1000 genomes]
rs7641510	0.85[EUR][1000 genomes]
rs7643933	0.83[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs977878	0.86[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs978798	0.88[AFR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9853891	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1006081	chr3:83421626-84262106	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv460739	chr3:83547435-83626697	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv525529	chr3:83579878-83625938	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:83622400-83622600	Enhancers	Breast Myoepithelial Primary Cells	Breast

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