Variant report

Variant	rs1377621
Chromosome Location	chr3:83562241-83562242
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs12496167	0.80[EUR][1000 genomes]
rs12637780	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13062745	0.88[EUR][1000 genomes]
rs13074519	0.85[EUR][1000 genomes]
rs1377626	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1453728	0.81[EUR][1000 genomes]
rs1453732	0.88[EUR][1000 genomes]
rs1453734	0.81[EUR][1000 genomes]
rs17175780	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2045078	0.80[EUR][1000 genomes]
rs2318135	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3214002	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs35476325	0.80[EUR][1000 genomes]
rs4367082	0.86[ASN][1000 genomes]
rs4374540	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4605563	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4856458	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs59702218	0.99[ASN][1000 genomes]
rs62257888	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6548884	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6548885	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6785019	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7625312	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7641510	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs978798	0.81[EUR][1000 genomes]
rs9839870	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1006081	chr3:83421626-84262106	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1013465	chr3:83484576-83575729	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv460739	chr3:83547435-83626697	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:83560800-83564200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr3:83561600-83563600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr3:83561600-83563800	Enhancers	Dnd41	blood
4	chr3:83561800-83562600	Enhancers	iPS-20b Cell Line	embryonic stem cell
5	chr3:83561800-83563200	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr3:83561800-83564000	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr3:83561800-83564400	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr3:83561800-83564600	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr3:83561800-83565400	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr3:83562000-83563000	Enhancers	Primary hematopoietic stem cells	blood
11	chr3:83562000-83563000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr3:83562000-83564400	Enhancers	HUES64 Cell Line	embryonic stem cell
13	chr3:83562200-83562600	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr3:83562200-83563000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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