Variant report

Variant	rs4367082
Chromosome Location	chr3:83565945-83565946
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10049367	0.83[EUR][1000 genomes]
rs1377621	0.86[ASN][1000 genomes]
rs1377626	0.85[ASN][1000 genomes]
rs1453727	0.83[EUR][1000 genomes]
rs2318135	0.86[ASN][1000 genomes]
rs2873634	0.83[EUR][1000 genomes]
rs4374540	0.85[ASN][1000 genomes]
rs4605563	0.86[ASN][1000 genomes]
rs4856458	0.85[ASN][1000 genomes]
rs59702218	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62257888	0.85[ASN][1000 genomes]
rs6548884	0.85[ASN][1000 genomes]
rs6548885	0.85[ASN][1000 genomes]
rs7625312	0.86[ASN][1000 genomes]
rs7641510	0.86[ASN][1000 genomes]
rs9839870	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1006081	chr3:83421626-84262106	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1013465	chr3:83484576-83575729	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv460739	chr3:83547435-83626697	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:83563600-83566800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr3:83565200-83566600	Enhancers	Fetal Heart	heart
3	chr3:83565800-83566000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr3:83565800-83566000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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