Variant report
| Variant | rs3214002 |
|---|---|
| Chromosome Location | chr3:83576033-83576034 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:25)
| rs_ID | r2[population] |
|---|---|
| rs11127820 | 0.82[EUR][1000 genomes] |
| rs12496167 | 0.84[EUR][1000 genomes] |
| rs12497100 | 0.84[EUR][1000 genomes] |
| rs12637780 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs13062745 | 0.82[EUR][1000 genomes] |
| rs13074519 | 0.87[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs1377621 | 0.81[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs1377626 | 0.91[EUR][1000 genomes] |
| rs1453728 | 0.85[EUR][1000 genomes] |
| rs1453732 | 0.82[EUR][1000 genomes] |
| rs1453734 | 0.85[EUR][1000 genomes] |
| rs17175780 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2045078 | 0.84[EUR][1000 genomes] |
| rs2318135 | 0.81[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs35476325 | 0.84[EUR][1000 genomes] |
| rs4374540 | 0.90[EUR][1000 genomes] |
| rs4605563 | 0.81[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs4856458 | 0.91[EUR][1000 genomes] |
| rs62257888 | 0.91[EUR][1000 genomes] |
| rs6548884 | 0.91[EUR][1000 genomes] |
| rs6548885 | 0.91[EUR][1000 genomes] |
| rs6785019 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7625312 | 0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs7641510 | 0.81[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs978798 | 0.85[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1006081 | chr3:83421626-84262106 | Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 13 gene(s) | inside rSNPs | diseases |
| 2 | nsv460739 | chr3:83547435-83626697 | Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Genic enhancers | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:83575000-83576200 | Weak transcription | Brain Germinal Matrix | brain |
| 2 | chr3:83575800-83576200 | Enhancers | ES-I3 Cell Line | embryonic stem cell |
