Variant report
| Variant | rs35476325 |
|---|---|
| Chromosome Location | chr3:83667644-83667645 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs11127820 | 0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs12496167 | 0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs12497100 | 0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs12637780 | 0.82[EUR][1000 genomes] |
| rs13074519 | 0.90[AFR][1000 genomes];0.93[EUR][1000 genomes] |
| rs1377621 | 0.80[EUR][1000 genomes] |
| rs1453727 | 0.98[ASN][1000 genomes] |
| rs1453728 | 0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs1453734 | 0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs17175780 | 0.84[EUR][1000 genomes] |
| rs2045078 | 0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs2045079 | 0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs2056608 | 0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs2318135 | 0.80[EUR][1000 genomes] |
| rs2873634 | 0.98[ASN][1000 genomes] |
| rs3214002 | 0.84[EUR][1000 genomes] |
| rs60462424 | 0.94[ASN][1000 genomes] |
| rs6785019 | 0.84[EUR][1000 genomes] |
| rs7643933 | 0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs977878 | 0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs978798 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs9853891 | 0.98[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1006081 | chr3:83421626-84262106 | Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 13 gene(s) | inside rSNPs | diseases |
| 2 | nsv460741 | chr3:83626697-83867681 | ZNF genes & repeats Weak transcription Enhancers Active TSS | lncRNA | 1 gene(s) | inside rSNPs | diseases |
| 3 | nsv590811 | chr3:83626697-83867681 | Enhancers Active TSS ZNF genes & repeats Weak transcription | lncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:83665200-83671200 | Weak transcription | Foreskin Melanocyte Primary Cells skin03 | Skin |
