Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11127820	0.82[EUR][1000 genomes]
rs12496167	0.84[EUR][1000 genomes]
rs12497100	0.84[EUR][1000 genomes]
rs12637780	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13062745	0.82[EUR][1000 genomes]
rs13074519	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1377621	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1377626	0.91[EUR][1000 genomes]
rs1453728	0.85[EUR][1000 genomes]
rs1453732	0.82[EUR][1000 genomes]
rs1453734	0.85[EUR][1000 genomes]
rs17175780	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2045078	0.84[EUR][1000 genomes]
rs2318135	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs3214002	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35476325	0.84[EUR][1000 genomes]
rs4374540	0.90[EUR][1000 genomes]
rs4605563	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4856458	0.91[EUR][1000 genomes]
rs62257888	0.91[EUR][1000 genomes]
rs6548884	0.91[EUR][1000 genomes]
rs6548885	0.91[EUR][1000 genomes]
rs7625312	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7641510	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs978798	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1006081	chr3:83421626-84262106	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1013465	chr3:83484576-83575729	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv460739	chr3:83547435-83626697	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:83573400-83574400	Enhancers	Brain Hippocampus Middle	brain
2	chr3:83573400-83574600	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr3:83573400-83575000	Enhancers	Brain Germinal Matrix	brain
4	chr3:83573600-83574200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr3:83573600-83574200	Enhancers	Brain Substantia Nigra	brain
6	chr3:83573600-83574200	Enhancers	Fetal Brain Male	brain
7	chr3:83574000-83574400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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