Variant report

Variant	rs10050988
Chromosome Location	chr5:36424192-36424193
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:36416459..36418425-chr5:36422769..36425113,2	K562	blood:
2	chr5:36415024..36418425-chr5:36419163..36425113,5	K562	blood:

rs_ID	r²[population]
rs10042470	1.00[EUR][1000 genomes]
rs10213853	1.00[EUR][1000 genomes]
rs13358189	1.00[EUR][1000 genomes]
rs13359855	1.00[EUR][1000 genomes]
rs16903117	1.00[EUR][1000 genomes]
rs28469511	1.00[EUR][1000 genomes]
rs28564846	1.00[EUR][1000 genomes]
rs58474198	1.00[EUR][1000 genomes]
rs6875408	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73748605	1.00[EUR][1000 genomes]
rs7704701	1.00[EUR][1000 genomes]

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:36419800-36430200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr5:36422200-36424200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr5:36422200-36424400	Enhancers	Primary hematopoietic stem cells short term culture	blood
4	chr5:36422400-36424200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr5:36422400-36424600	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr5:36422600-36424400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr5:36422600-36424400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr5:36422800-36424200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr5:36422800-36424200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr5:36422800-36432000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr5:36423000-36424400	Enhancers	Primary T cells from cord blood	blood
12	chr5:36423000-36424600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr5:36423200-36424400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr5:36423400-36424600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr5:36423800-36424200	Enhancers	Stomach Mucosa	stomach
16	chr5:36423800-36424200	Enhancers	NH-A	brain
17	chr5:36423800-36424400	Enhancers	Primary hematopoietic stem cells	blood
18	chr5:36423800-36425400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr5:36423800-36425600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr5:36424000-36425400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr5:36424000-36425800	Enhancers	Hela-S3	cervix

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