Variant report

Variant	rs13358189
Chromosome Location	chr5:36360624-36360625
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10042470	1.00[EUR][1000 genomes]
rs10050988	1.00[EUR][1000 genomes]
rs10213853	1.00[EUR][1000 genomes]
rs13359855	1.00[EUR][1000 genomes]
rs28469511	1.00[EUR][1000 genomes]
rs28564846	1.00[EUR][1000 genomes]
rs58474198	1.00[EUR][1000 genomes]
rs6875408	1.00[EUR][1000 genomes]
rs73748605	1.00[EUR][1000 genomes]
rs7704701	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv881598	chr5:36248752-36382802	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:36344400-36362000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr5:36357200-36360800	Enhancers	HSMMtube	muscle
3	chr5:36358200-36363200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr5:36358400-36363200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr5:36358400-36365200	Weak transcription	Primary hematopoietic stem cells	blood
6	chr5:36358400-36367200	Weak transcription	NHDF-Ad	bronchial
7	chr5:36358600-36363200	Weak transcription	NH-A	brain
8	chr5:36358600-36366600	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr5:36358800-36363400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr5:36359400-36364800	Weak transcription	Fetal Heart	heart
11	chr5:36359600-36361200	Enhancers	Hela-S3	cervix
12	chr5:36359800-36361000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr5:36359800-36363200	Weak transcription	HSMM	muscle
14	chr5:36360000-36363200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr5:36360000-36363200	Weak transcription	Colon Smooth Muscle	Colon
16	chr5:36360000-36363200	Weak transcription	NHEK	skin
17	chr5:36360000-36363400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr5:36360000-36367000	Weak transcription	Fetal Lung	lung
19	chr5:36360000-36373400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr5:36360200-36361000	Enhancers	Primary hematopoietic stem cells short term culture	blood
21	chr5:36360200-36361200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr5:36360200-36363200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr5:36360400-36360800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr5:36360400-36360800	Enhancers	GM12878-XiMat	blood
25	chr5:36360400-36363000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr5:36360400-36363000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr5:36360400-36363200	Weak transcription	Osteobl	bone
28	chr5:36360600-36361000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr5:36360600-36364600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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