Variant report

Variant	rs10051655
Chromosome Location	chr5:142289970-142289971
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10044668	1.00[EUR][1000 genomes]
rs10045128	1.00[EUR][1000 genomes]
rs10056044	1.00[EUR][1000 genomes]
rs10076583	1.00[EUR][1000 genomes]
rs10080138	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10155562	1.00[EUR][1000 genomes]
rs10214217	1.00[EUR][1000 genomes]
rs10477199	1.00[EUR][1000 genomes]
rs12332305	1.00[EUR][1000 genomes]
rs13169522	1.00[EUR][1000 genomes]
rs2108645	1.00[EUR][1000 genomes]
rs28688005	1.00[EUR][1000 genomes]
rs58817012	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7702357	1.00[EUR][1000 genomes]
rs9324902	1.00[EUR][1000 genomes]
rs9324906	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031126	chr5:141893763-142399571	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	esv2830375	chr5:141991792-142449956	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:101 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:142268600-142301600	Weak transcription	Colon Smooth Muscle	Colon
2	chr5:142268600-142303800	Weak transcription	Psoas Muscle	Psoas
3	chr5:142272600-142301600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
4	chr5:142273600-142300800	Strong transcription	Primary T cells from cord blood	blood
5	chr5:142273800-142296200	Strong transcription	Primary T cells fromperipheralblood	blood
6	chr5:142274600-142295200	Weak transcription	A549	lung
7	chr5:142274800-142305600	Weak transcription	Esophagus	oesophagus
8	chr5:142276600-142305200	Weak transcription	Stomach Mucosa	stomach
9	chr5:142277200-142293600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr5:142277200-142311800	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr5:142280000-142311800	Weak transcription	Fetal Heart	heart
12	chr5:142280600-142295200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
13	chr5:142280800-142294200	Weak transcription	Ovary	ovary
14	chr5:142281000-142295000	Strong transcription	Sigmoid Colon	Sigmoid Colon
15	chr5:142281000-142297600	Strong transcription	Rectal Mucosa Donor 31	rectum
16	chr5:142281200-142302000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr5:142281400-142293400	Strong transcription	Primary T helper cells PMA-I stimulated	--
18	chr5:142281600-142297400	Strong transcription	Duodenum Mucosa	Duodenum
19	chr5:142281800-142291000	Strong transcription	Primary B cells from cord blood	blood
20	chr5:142281800-142303800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
21	chr5:142281800-142309200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr5:142282200-142290600	Strong transcription	Fetal Intestine Large	intestine
23	chr5:142282200-142293600	Strong transcription	Placenta	Placenta
24	chr5:142282600-142314000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr5:142282800-142298800	Strong transcription	Primary monocytes fromperipheralblood	blood
26	chr5:142282800-142302200	Strong transcription	Monocytes-CD14+_RO01746	blood
27	chr5:142283000-142290000	Strong transcription	Primary hematopoietic stem cells	blood
28	chr5:142283000-142298800	Strong transcription	Primary neutrophils fromperipheralblood	blood
29	chr5:142283600-142303800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
30	chr5:142283800-142290600	Weak transcription	Rectal Smooth Muscle	rectum
31	chr5:142283800-142290600	Weak transcription	Small Intestine	intestine
32	chr5:142284000-142292000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
33	chr5:142284600-142291800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
34	chr5:142285200-142292400	Weak transcription	Placenta Amnion	Placenta Amnion
35	chr5:142285800-142293200	Weak transcription	Cortex derived primary cultured neurospheres	brain
36	chr5:142285800-142299400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
37	chr5:142285800-142303600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
38	chr5:142286800-142300800	Weak transcription	Fetal Kidney	kidney
39	chr5:142287000-142290600	Weak transcription	Pancreas	Pancrea
40	chr5:142287000-142291600	Weak transcription	Brain Hippocampus Middle	brain
41	chr5:142287000-142293600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr5:142287000-142302000	Weak transcription	Skeletal Muscle Female	skeletal muscle
43	chr5:142287000-142302200	Weak transcription	Brain Substantia Nigra	brain
44	chr5:142287000-142302200	Weak transcription	Right Atrium	heart
45	chr5:142287200-142292800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
46	chr5:142287200-142294000	Weak transcription	Fetal Lung	lung
47	chr5:142287200-142294200	Strong transcription	Fetal Thymus	thymus
48	chr5:142287200-142295200	Weak transcription	HUES48 Cell Line	embryonic stem cell
49	chr5:142287200-142305200	Weak transcription	NHDF-Ad	bronchial
50	chr5:142287200-142311400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood

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