Variant report

Variant	rs10155562
Chromosome Location	chr5:142478466-142478467
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:142478262..142480394-chr5:142625617..142627473,2	K562	blood:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10044668	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10045128	1.00[EUR][1000 genomes]
rs10051655	1.00[EUR][1000 genomes]
rs10056044	1.00[EUR][1000 genomes]
rs10074187	1.00[EUR][1000 genomes]
rs10076583	1.00[EUR][1000 genomes]
rs10080138	1.00[EUR][1000 genomes]
rs10214217	1.00[EUR][1000 genomes]
rs10477199	1.00[EUR][1000 genomes]
rs10477202	1.00[EUR][1000 genomes]
rs11167803	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs11951777	1.00[EUR][1000 genomes]
rs12332305	1.00[EUR][1000 genomes]
rs13356063	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2108645	1.00[EUR][1000 genomes]
rs28688005	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2963146	1.00[EUR][1000 genomes]
rs58817012	1.00[EUR][1000 genomes]
rs60473595	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60477396	0.89[AMR][1000 genomes]
rs7702357	1.00[EUR][1000 genomes]
rs9324901	1.00[AMR][1000 genomes]
rs9324902	1.00[EUR][1000 genomes]
rs9324906	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830511	chr5:142335447-142496694	Weak transcription Flanking Active TSS Enhancers Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1025662	chr5:142345454-142498236	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv522807	chr5:142417658-142529960	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:142447400-142480200	Weak transcription	Primary T helper cells PMA-I stimulated	--
2	chr5:142449400-142487600	Weak transcription	Liver	Liver
3	chr5:142450000-142497000	Weak transcription	Primary B cells from cord blood	blood
4	chr5:142458000-142488400	Weak transcription	Gastric	stomach
5	chr5:142463200-142513600	Weak transcription	Thymus	Thymus
6	chr5:142465400-142480000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr5:142465400-142481600	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr5:142467000-142481800	Weak transcription	Psoas Muscle	Psoas
9	chr5:142467200-142480200	Weak transcription	Left Ventricle	heart
10	chr5:142467200-142481400	Weak transcription	Fetal Muscle Leg	muscle
11	chr5:142467200-142485400	Weak transcription	HepG2	liver
12	chr5:142467800-142485000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr5:142468000-142479800	Weak transcription	Primary T cells from cord blood	blood
14	chr5:142469600-142480400	Weak transcription	Primary neutrophils fromperipheralblood	blood
15	chr5:142473200-142480200	Strong transcription	Monocytes-CD14+_RO01746	blood
16	chr5:142473800-142481800	Weak transcription	Fetal Stomach	stomach
17	chr5:142474000-142480200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
18	chr5:142474000-142481400	Weak transcription	Placenta	Placenta
19	chr5:142474000-142481600	Weak transcription	Aorta	Aorta
20	chr5:142474000-142481800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
21	chr5:142474000-142488000	Weak transcription	Fetal Intestine Large	intestine
22	chr5:142474000-142489400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr5:142474000-142489800	Weak transcription	Rectal Mucosa Donor 29	rectum
24	chr5:142474000-142490400	Weak transcription	Fetal Intestine Small	intestine
25	chr5:142474200-142490000	Weak transcription	Duodenum Smooth Muscle	Duodenum
26	chr5:142474400-142480800	Weak transcription	Brain Anterior Caudate	brain
27	chr5:142474400-142481600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr5:142474400-142482000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
29	chr5:142474400-142488000	Weak transcription	Stomach Mucosa	stomach
30	chr5:142474400-142489600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
31	chr5:142474400-142527200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr5:142475200-142480600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
33	chr5:142476200-142491400	Weak transcription	Esophagus	oesophagus
34	chr5:142476600-142478800	Weak transcription	GM12878-XiMat	blood
35	chr5:142476600-142480600	Weak transcription	Primary monocytes fromperipheralblood	blood

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