Variant report

Variant	rs10076583
Chromosome Location	chr5:142452809-142452810
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10044668	1.00[EUR][1000 genomes]
rs10045128	1.00[EUR][1000 genomes]
rs10051655	1.00[EUR][1000 genomes]
rs10056044	1.00[EUR][1000 genomes]
rs10074187	1.00[EUR][1000 genomes]
rs10080138	1.00[EUR][1000 genomes]
rs10155562	1.00[EUR][1000 genomes]
rs10214217	1.00[EUR][1000 genomes]
rs10477199	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10477202	1.00[EUR][1000 genomes]
rs11951777	1.00[EUR][1000 genomes]
rs12332305	1.00[EUR][1000 genomes]
rs13356063	1.00[EUR][1000 genomes]
rs2108645	1.00[EUR][1000 genomes]
rs28688005	1.00[EUR][1000 genomes]
rs58817012	1.00[EUR][1000 genomes]
rs7702357	1.00[EUR][1000 genomes]
rs9324902	1.00[EUR][1000 genomes]
rs9324906	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830511	chr5:142335447-142496694	Weak transcription Flanking Active TSS Enhancers Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1025662	chr5:142345454-142498236	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv522807	chr5:142417658-142529960	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:69 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:142439200-142456400	Weak transcription	HepG2	liver
2	chr5:142443400-142454200	Weak transcription	Pancreas	Pancrea
3	chr5:142443600-142465000	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr5:142443800-142454400	Weak transcription	Esophagus	oesophagus
5	chr5:142443800-142473600	Weak transcription	Aorta	Aorta
6	chr5:142444800-142454200	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr5:142444800-142454400	Weak transcription	Spleen	Spleen
8	chr5:142445000-142453800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr5:142445200-142454000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr5:142445200-142454000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr5:142445400-142453400	Weak transcription	Rectal Smooth Muscle	rectum
12	chr5:142445400-142454000	Weak transcription	NHEK	skin
13	chr5:142445400-142454200	Weak transcription	Right Ventricle	heart
14	chr5:142445400-142454400	Weak transcription	Stomach Smooth Muscle	stomach
15	chr5:142445400-142466600	Weak transcription	Brain Anterior Caudate	brain
16	chr5:142445600-142453400	Weak transcription	Brain Substantia Nigra	brain
17	chr5:142445600-142464000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
18	chr5:142446000-142454400	Weak transcription	Sigmoid Colon	Sigmoid Colon
19	chr5:142446000-142454800	Weak transcription	Brain Angular Gyrus	brain
20	chr5:142446000-142456600	Weak transcription	Fetal Heart	heart
21	chr5:142446200-142473400	Weak transcription	Stomach Mucosa	stomach
22	chr5:142446600-142457000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr5:142447000-142454200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr5:142447000-142457000	Weak transcription	Psoas Muscle	Psoas
25	chr5:142447000-142457200	Weak transcription	Lung	lung
26	chr5:142447000-142471600	Weak transcription	Dnd41	blood
27	chr5:142447200-142464800	Weak transcription	Fetal Lung	lung
28	chr5:142447400-142453400	Weak transcription	Brain Hippocampus Middle	brain
29	chr5:142447400-142454200	Weak transcription	Fetal Stomach	stomach
30	chr5:142447400-142454800	Strong transcription	Monocytes-CD14+_RO01746	blood
31	chr5:142447400-142473600	Weak transcription	Adipose Nuclei	Adipose
32	chr5:142447400-142480200	Weak transcription	Primary T helper cells PMA-I stimulated	--
33	chr5:142447800-142462800	Weak transcription	Thymus	Thymus
34	chr5:142448600-142454200	Weak transcription	NHDF-Ad	bronchial
35	chr5:142448600-142457600	Weak transcription	HSMM	muscle
36	chr5:142448600-142465200	Weak transcription	NHLF	lung
37	chr5:142448600-142473600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
38	chr5:142448800-142454200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr5:142448800-142454200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr5:142448800-142454400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr5:142449000-142454200	Weak transcription	Gastric	stomach
42	chr5:142449000-142455000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
43	chr5:142449000-142464000	Weak transcription	Small Intestine	intestine
44	chr5:142449400-142487600	Weak transcription	Liver	Liver
45	chr5:142449600-142464800	Weak transcription	Duodenum Mucosa	Duodenum
46	chr5:142449800-142463400	Weak transcription	Rectal Mucosa Donor 29	rectum
47	chr5:142449800-142473800	Weak transcription	Primary hematopoietic stem cells	blood
48	chr5:142450000-142454400	Weak transcription	Rectal Mucosa Donor 31	rectum
49	chr5:142450000-142456000	Weak transcription	Primary T helper cells fromperipheralblood	blood
50	chr5:142450000-142457000	Weak transcription	Fetal Thymus	thymus

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