Variant report

Variant	rs10074187
Chromosome Location	chr5:142511554-142511555
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10044668	1.00[EUR][1000 genomes]
rs10045128	1.00[EUR][1000 genomes]
rs10056044	1.00[EUR][1000 genomes]
rs10076583	1.00[EUR][1000 genomes]
rs10080138	1.00[EUR][1000 genomes]
rs10155562	1.00[EUR][1000 genomes]
rs10214217	1.00[EUR][1000 genomes]
rs10477199	1.00[EUR][1000 genomes]
rs10477202	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11951777	1.00[EUR][1000 genomes]
rs12332305	1.00[EUR][1000 genomes]
rs13356063	1.00[EUR][1000 genomes]
rs2108645	1.00[EUR][1000 genomes]
rs28688005	1.00[EUR][1000 genomes]
rs2963146	1.00[EUR][1000 genomes]
rs34780316	1.00[EUR][1000 genomes]
rs58817012	1.00[EUR][1000 genomes]
rs7702357	1.00[EUR][1000 genomes]
rs9324902	1.00[EUR][1000 genomes]
rs9324906	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv522807	chr5:142417658-142529960	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:85 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:142463200-142513600	Weak transcription	Thymus	Thymus
2	chr5:142474400-142527200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr5:142489000-142514400	Weak transcription	Brain Anterior Caudate	brain
4	chr5:142491600-142534600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr5:142494600-142513400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr5:142494600-142513600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr5:142497600-142515400	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr5:142497800-142532200	Weak transcription	Colonic Mucosa	Colon
9	chr5:142498800-142513600	Weak transcription	Brain Angular Gyrus	brain
10	chr5:142498800-142527200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr5:142499000-142513600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
12	chr5:142499200-142513000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr5:142499200-142513400	Weak transcription	Ovary	ovary
14	chr5:142500200-142544400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
15	chr5:142500400-142513600	Weak transcription	Duodenum Smooth Muscle	Duodenum
16	chr5:142500400-142533800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
17	chr5:142500800-142513200	Weak transcription	Primary T helper cells fromperipheralblood	blood
18	chr5:142500800-142513400	Weak transcription	Primary T cells fromperipheralblood	blood
19	chr5:142501000-142513600	Weak transcription	Dnd41	blood
20	chr5:142502000-142513400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
21	chr5:142504400-142513400	Weak transcription	Aorta	Aorta
22	chr5:142504400-142513600	Weak transcription	HepG2	liver
23	chr5:142504400-142518400	Weak transcription	Fetal Thymus	thymus
24	chr5:142504600-142513400	Weak transcription	Pancreas	Pancrea
25	chr5:142504600-142513600	Weak transcription	Gastric	stomach
26	chr5:142504600-142513800	Weak transcription	Placenta Amnion	Placenta Amnion
27	chr5:142504600-142514200	Weak transcription	A549	lung
28	chr5:142504600-142518400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
29	chr5:142504800-142534200	Weak transcription	HUES48 Cell Line	embryonic stem cell
30	chr5:142505000-142513600	Weak transcription	Primary B cells from cord blood	blood
31	chr5:142505200-142513000	Weak transcription	Primary neutrophils fromperipheralblood	blood
32	chr5:142505200-142513400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr5:142506400-142513600	Weak transcription	Duodenum Mucosa	Duodenum
34	chr5:142506400-142516200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
35	chr5:142506600-142527000	Weak transcription	HUES6 Cell Line	embryonic stem cell
36	chr5:142507000-142513400	Weak transcription	GM12878-XiMat	blood
37	chr5:142507200-142513600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
38	chr5:142507400-142513200	Weak transcription	Primary T cells from cord blood	blood
39	chr5:142507800-142520200	Strong transcription	Monocytes-CD14+_RO01746	blood
40	chr5:142508000-142512000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
41	chr5:142508000-142513600	Enhancers	Muscle Satellite Cultured Cells	--
42	chr5:142508000-142513800	Enhancers	Fetal Muscle Leg	muscle
43	chr5:142508200-142513600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
44	chr5:142508400-142513400	Weak transcription	Spleen	Spleen
45	chr5:142508400-142513600	Weak transcription	Liver	Liver
46	chr5:142508400-142513600	Weak transcription	Lung	lung
47	chr5:142508400-142522200	Weak transcription	Stomach Smooth Muscle	stomach
48	chr5:142508600-142512800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr5:142508600-142512800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
50	chr5:142508600-142513400	Weak transcription	Stomach Mucosa	stomach

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