Variant report

Variant	rs2963146
Chromosome Location	chr5:142664342-142664343
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:142661940..142664778-chr5:142666941..142669072,2	K562	blood:
2	chr5:142664010..142666464-chr5:142736050..142738721,2	K562	blood:
3	chr5:142608719..142611580-chr5:142662478..142664615,2	K562	blood:

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10044668	1.00[EUR][1000 genomes]
rs10074187	1.00[EUR][1000 genomes]
rs10155562	1.00[EUR][1000 genomes]
rs10214217	1.00[EUR][1000 genomes]
rs10477202	1.00[EUR][1000 genomes]
rs10477205	0.88[MKK][hapmap]
rs11951777	1.00[EUR][1000 genomes]
rs13356063	1.00[EUR][1000 genomes]
rs28688005	1.00[EUR][1000 genomes]
rs2918421	1.00[YRI][hapmap];0.97[AFR][1000 genomes]
rs2963145	0.97[AFR][1000 genomes]
rs2963156	0.82[YRI][hapmap]
rs34780316	1.00[EUR][1000 genomes]
rs4912907	1.00[YRI][hapmap];1.00[EUR][1000 genomes]
rs9324902	1.00[EUR][1000 genomes]
rs9324906	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1825941	chr5:142568715-142728031	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	esv33748	chr5:142638267-142699595	Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
3	nsv5041	chr5:142653189-142697896	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:103 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:142646600-142672400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr5:142650000-142674000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr5:142650600-142677200	Weak transcription	Aorta	Aorta
4	chr5:142652200-142669800	Weak transcription	Left Ventricle	heart
5	chr5:142653000-142671200	Weak transcription	Brain Hippocampus Middle	brain
6	chr5:142653200-142674800	Weak transcription	Rectal Smooth Muscle	rectum
7	chr5:142654600-142666600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr5:142655000-142664800	Weak transcription	NHEK	skin
9	chr5:142655000-142669800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
10	chr5:142655000-142671600	Weak transcription	K562	blood
11	chr5:142655200-142674000	Weak transcription	Rectal Mucosa Donor 31	rectum
12	chr5:142655200-142674200	Weak transcription	Brain Angular Gyrus	brain
13	chr5:142655400-142672600	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr5:142655800-142664600	Strong transcription	NHDF-Ad	bronchial
15	chr5:142655800-142669800	Weak transcription	Skeletal Muscle Male	skeletal muscle
16	chr5:142655800-142670200	Weak transcription	Sigmoid Colon	Sigmoid Colon
17	chr5:142655800-142671800	Weak transcription	Psoas Muscle	Psoas
18	chr5:142655800-142677200	Weak transcription	Spleen	Spleen
19	chr5:142655800-142699200	Strong transcription	Dnd41	blood
20	chr5:142656000-142677400	Weak transcription	Gastric	stomach
21	chr5:142656400-142664400	Strong transcription	Primary T helper cells fromperipheralblood	blood
22	chr5:142656600-142671600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
23	chr5:142656600-142677000	Weak transcription	Lung	lung
24	chr5:142657000-142664400	Strong transcription	HMEC	breast
25	chr5:142657000-142674000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
26	chr5:142657800-142667800	Weak transcription	Fetal Stomach	stomach
27	chr5:142657800-142671800	Weak transcription	Rectal Mucosa Donor 29	rectum
28	chr5:142657800-142695400	Weak transcription	Pancreas	Pancrea
29	chr5:142658000-142665000	Strong transcription	Primary T cells fromperipheralblood	blood
30	chr5:142658000-142665200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
31	chr5:142658000-142679000	Weak transcription	Colonic Mucosa	Colon
32	chr5:142658200-142664800	Strong transcription	Osteobl	bone
33	chr5:142658200-142665000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr5:142658200-142671400	Weak transcription	Colon Smooth Muscle	Colon
35	chr5:142658200-142694800	Weak transcription	Right Ventricle	heart
36	chr5:142658400-142665000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr5:142658400-142665000	Strong transcription	Fetal Lung	lung
38	chr5:142658400-142714800	Weak transcription	Esophagus	oesophagus
39	chr5:142658600-142664600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr5:142658800-142677400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
41	chr5:142659400-142677200	Weak transcription	HSMMtube	muscle
42	chr5:142659600-142674600	Weak transcription	HepG2	liver
43	chr5:142659600-142677400	Weak transcription	Ovary	ovary
44	chr5:142659800-142679400	Weak transcription	Small Intestine	intestine
45	chr5:142659800-142692600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
46	chr5:142660200-142670400	Weak transcription	Brain Anterior Caudate	brain
47	chr5:142660600-142664400	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
48	chr5:142660800-142669800	Weak transcription	Thymus	Thymus
49	chr5:142661400-142664400	Strong transcription	Placenta	Placenta
50	chr5:142661400-142665000	Strong transcription	Liver	Liver

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