Variant report

Variant	rs13356063
Chromosome Location	chr5:142498541-142498542
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:142498526..142500168-chr5:142783082..142784755,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000113580	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10044668	1.00[EUR][1000 genomes]
rs10045128	1.00[EUR][1000 genomes]
rs10056044	1.00[EUR][1000 genomes]
rs10065814	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10074187	1.00[EUR][1000 genomes]
rs10076583	1.00[EUR][1000 genomes]
rs10080138	1.00[EUR][1000 genomes]
rs10155562	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10214217	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10477199	1.00[EUR][1000 genomes]
rs10477201	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10477202	1.00[EUR][1000 genomes]
rs11167803	0.90[AFR][1000 genomes]
rs11951777	1.00[EUR][1000 genomes]
rs12332305	1.00[EUR][1000 genomes]
rs2108645	1.00[EUR][1000 genomes]
rs28688005	0.98[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2963146	1.00[EUR][1000 genomes]
rs58817012	1.00[EUR][1000 genomes]
rs60473595	0.83[AFR][1000 genomes]
rs60477396	0.98[AFR][1000 genomes]
rs61287676	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7702357	1.00[EUR][1000 genomes]
rs9324902	1.00[EUR][1000 genomes]
rs9324906	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv522807	chr5:142417658-142529960	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:66 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:142463200-142513600	Weak transcription	Thymus	Thymus
2	chr5:142474400-142527200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr5:142479200-142503600	Weak transcription	Fetal Thymus	thymus
4	chr5:142480400-142498600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
5	chr5:142480600-142500600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr5:142481000-142500600	Weak transcription	Dnd41	blood
7	chr5:142482000-142504200	Weak transcription	Aorta	Aorta
8	chr5:142482200-142499000	Weak transcription	Fetal Stomach	stomach
9	chr5:142482600-142500200	Weak transcription	Primary T cells fromperipheralblood	blood
10	chr5:142485800-142508000	Weak transcription	HSMM	muscle
11	chr5:142488400-142500600	Weak transcription	Fetal Intestine Large	intestine
12	chr5:142488600-142505800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr5:142489000-142508000	Weak transcription	Brain Cingulate Gyrus	brain
14	chr5:142489000-142514400	Weak transcription	Brain Anterior Caudate	brain
15	chr5:142490000-142504200	Weak transcription	Gastric	stomach
16	chr5:142490000-142508000	Weak transcription	Spleen	Spleen
17	chr5:142490200-142498600	Weak transcription	Rectal Mucosa Donor 29	rectum
18	chr5:142490200-142504200	Weak transcription	Pancreas	Pancrea
19	chr5:142490600-142498600	Weak transcription	H9 Cell Line	embryonic stem cell
20	chr5:142490600-142498800	Weak transcription	Sigmoid Colon	Sigmoid Colon
21	chr5:142490600-142500000	Weak transcription	Liver	Liver
22	chr5:142490600-142502800	Weak transcription	HepG2	liver
23	chr5:142491200-142498600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
24	chr5:142491600-142498800	Weak transcription	Duodenum Smooth Muscle	Duodenum
25	chr5:142491600-142500200	Weak transcription	Placenta	Placenta
26	chr5:142491600-142502400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
27	chr5:142491600-142504000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr5:142491600-142504200	Weak transcription	Esophagus	oesophagus
29	chr5:142491600-142510400	Weak transcription	Fetal Muscle Trunk	muscle
30	chr5:142491600-142534600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
31	chr5:142494200-142508000	Weak transcription	Lung	lung
32	chr5:142494600-142513400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr5:142494600-142513600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr5:142496000-142500200	Weak transcription	Primary T cells from cord blood	blood
35	chr5:142496200-142498800	Enhancers	Left Ventricle	heart
36	chr5:142496200-142499000	Enhancers	Right Atrium	heart
37	chr5:142496600-142498600	Weak transcription	Fetal Lung	lung
38	chr5:142496600-142503800	Weak transcription	Psoas Muscle	Psoas
39	chr5:142496800-142500200	Weak transcription	Skeletal Muscle Male	skeletal muscle
40	chr5:142496800-142500400	Enhancers	Primary monocytes fromperipheralblood	blood
41	chr5:142496800-142505600	Weak transcription	Adipose Nuclei	Adipose
42	chr5:142497000-142498600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
43	chr5:142497000-142498600	Weak transcription	Fetal Intestine Small	intestine
44	chr5:142497000-142500000	Enhancers	Primary B cells from cord blood	blood
45	chr5:142497200-142500600	Enhancers	Primary hematopoietic stem cells short term culture	blood
46	chr5:142497400-142498600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr5:142497400-142498600	Enhancers	GM12878-XiMat	blood
48	chr5:142497400-142498800	Enhancers	Fetal Heart	heart
49	chr5:142497400-142499400	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
50	chr5:142497400-142500800	Enhancers	Primary hematopoietic stem cells	blood

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