Variant report

Variant	rs11167803
Chromosome Location	chr5:142472109-142472110
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10044668	0.89[AMR][1000 genomes]
rs10065814	0.88[AFR][1000 genomes]
rs10155562	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs10214217	0.88[AFR][1000 genomes]
rs10477201	0.88[AFR][1000 genomes]
rs13356063	0.90[AFR][1000 genomes]
rs28688005	0.88[AFR][1000 genomes]
rs60473595	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs60477396	0.88[AFR][1000 genomes]
rs61287676	0.88[AFR][1000 genomes]
rs9324901	0.89[AMR][1000 genomes]
rs9324906	0.88[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830511	chr5:142335447-142496694	Weak transcription Flanking Active TSS Enhancers Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1025662	chr5:142345454-142498236	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv522807	chr5:142417658-142529960	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:142443800-142473600	Weak transcription	Aorta	Aorta
2	chr5:142446200-142473400	Weak transcription	Stomach Mucosa	stomach
3	chr5:142447400-142473600	Weak transcription	Adipose Nuclei	Adipose
4	chr5:142447400-142480200	Weak transcription	Primary T helper cells PMA-I stimulated	--
5	chr5:142448600-142473600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr5:142449400-142487600	Weak transcription	Liver	Liver
7	chr5:142449800-142473800	Weak transcription	Primary hematopoietic stem cells	blood
8	chr5:142450000-142497000	Weak transcription	Primary B cells from cord blood	blood
9	chr5:142458000-142488400	Weak transcription	Gastric	stomach
10	chr5:142459200-142473400	Weak transcription	Primary T cells fromperipheralblood	blood
11	chr5:142463200-142513600	Weak transcription	Thymus	Thymus
12	chr5:142465400-142473600	Weak transcription	Fetal Intestine Small	intestine
13	chr5:142465400-142473600	Weak transcription	Rectal Mucosa Donor 29	rectum
14	chr5:142465400-142480000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
15	chr5:142465400-142481600	Weak transcription	Rectal Mucosa Donor 31	rectum
16	chr5:142467000-142473200	Weak transcription	Placenta	Placenta
17	chr5:142467000-142473400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
18	chr5:142467000-142473400	Weak transcription	Fetal Stomach	stomach
19	chr5:142467000-142473600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr5:142467000-142481800	Weak transcription	Psoas Muscle	Psoas
21	chr5:142467200-142473200	Weak transcription	Right Atrium	heart
22	chr5:142467200-142473600	Weak transcription	Fetal Intestine Large	intestine
23	chr5:142467200-142480200	Weak transcription	Left Ventricle	heart
24	chr5:142467200-142481400	Weak transcription	Fetal Muscle Leg	muscle
25	chr5:142467200-142485400	Weak transcription	HepG2	liver
26	chr5:142467600-142473200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr5:142467600-142473400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr5:142467600-142473800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr5:142467800-142485000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr5:142468000-142473400	Weak transcription	Right Ventricle	heart
31	chr5:142468000-142479800	Weak transcription	Primary T cells from cord blood	blood
32	chr5:142468800-142473600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr5:142469000-142473000	Enhancers	HUES48 Cell Line	embryonic stem cell
34	chr5:142469400-142473200	Weak transcription	Primary monocytes fromperipheralblood	blood
35	chr5:142469600-142473200	Enhancers	iPS-15b Cell Line	embryonic stem cell
36	chr5:142469600-142480400	Weak transcription	Primary neutrophils fromperipheralblood	blood
37	chr5:142470000-142473200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
38	chr5:142470400-142473200	Weak transcription	Monocytes-CD14+_RO01746	blood
39	chr5:142470600-142472200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
40	chr5:142470600-142472400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
41	chr5:142471000-142472400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
42	chr5:142471000-142472600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
43	chr5:142471000-142473600	Weak transcription	H9 Cell Line	embryonic stem cell
44	chr5:142471200-142472200	Weak transcription	HUES6 Cell Line	embryonic stem cell
45	chr5:142471200-142473400	Weak transcription	Osteobl	bone
46	chr5:142471400-142472400	Weak transcription	HUES64 Cell Line	embryonic stem cell
47	chr5:142471800-142474200	Enhancers	H1 Cell Line	embryonic stem cell
48	chr5:142472000-142472600	Enhancers	iPS-18 Cell Line	embryonic stem cell

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