Variant report

Variant	rs11951777
Chromosome Location	chr5:142597002-142597003
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:142583668..142586611-chr5:142595999..142598896,3	K562	blood:
2	chr5:142595316..142597288-chr5:142780965..142782854,2	K562	blood:
3	chr5:142590492..142593380-chr5:142596562..142598363,2	K562	blood:
4	chr5:142596778..142598472-chr5:142603260..142605888,2	K562	blood:

Variant related genes	Relation type
ENSG00000113580	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10044668	1.00[EUR][1000 genomes]
rs10045128	1.00[EUR][1000 genomes]
rs10056044	1.00[EUR][1000 genomes]
rs10074187	1.00[EUR][1000 genomes]
rs10076583	1.00[EUR][1000 genomes]
rs10155562	1.00[EUR][1000 genomes]
rs10214217	1.00[EUR][1000 genomes]
rs10477199	1.00[EUR][1000 genomes]
rs10477202	1.00[EUR][1000 genomes]
rs10482686	1.00[AMR][1000 genomes]
rs11955803	1.00[AMR][1000 genomes]
rs12332305	1.00[EUR][1000 genomes]
rs13356063	1.00[EUR][1000 genomes]
rs2108645	1.00[EUR][1000 genomes]
rs28688005	1.00[EUR][1000 genomes]
rs2963146	1.00[EUR][1000 genomes]
rs34780316	1.00[EUR][1000 genomes]
rs4912907	1.00[EUR][1000 genomes]
rs73797552	1.00[AMR][1000 genomes]
rs7702357	1.00[EUR][1000 genomes]
rs9324902	1.00[EUR][1000 genomes]
rs9324906	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1825941	chr5:142568715-142728031	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:109 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:142584600-142609000	Weak transcription	Pancreas	Pancrea
2	chr5:142585400-142601400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
3	chr5:142585600-142599400	Weak transcription	Rectal Smooth Muscle	rectum
4	chr5:142585800-142600400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr5:142586200-142601400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
6	chr5:142586600-142599200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
7	chr5:142587200-142601400	Weak transcription	Brain Anterior Caudate	brain
8	chr5:142587400-142603000	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr5:142588400-142599000	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr5:142588400-142599400	Enhancers	K562	blood
11	chr5:142592600-142597800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr5:142592600-142599800	Weak transcription	Brain Cingulate Gyrus	brain
13	chr5:142592600-142601200	Weak transcription	Primary T helper cells PMA-I stimulated	--
14	chr5:142592800-142598400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
15	chr5:142593000-142597200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr5:142593000-142597600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
17	chr5:142593000-142602200	Weak transcription	Brain Substantia Nigra	brain
18	chr5:142593200-142599200	Weak transcription	HMEC	breast
19	chr5:142593400-142597800	Strong transcription	Rectal Mucosa Donor 29	rectum
20	chr5:142593400-142598800	Weak transcription	NHLF	lung
21	chr5:142593400-142599400	Weak transcription	Ovary	ovary
22	chr5:142593400-142600200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr5:142593400-142601600	Weak transcription	Fetal Heart	heart
24	chr5:142593400-142603200	Weak transcription	H9 Cell Line	embryonic stem cell
25	chr5:142593600-142600000	Weak transcription	Primary B cells from peripheral blood	blood
26	chr5:142593600-142600200	Weak transcription	Brain Hippocampus Middle	brain
27	chr5:142593600-142601400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
28	chr5:142593600-142602200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr5:142593600-142606200	Weak transcription	HSMMtube	muscle
30	chr5:142593600-142609000	Weak transcription	HSMM	muscle
31	chr5:142593600-142609600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
32	chr5:142593800-142597600	Strong transcription	Primary T cells fromperipheralblood	blood
33	chr5:142593800-142599200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr5:142593800-142599600	Strong transcription	Primary T cells from cord blood	blood
35	chr5:142593800-142599800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
36	chr5:142593800-142601200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
37	chr5:142594000-142598800	Strong transcription	Fetal Muscle Trunk	muscle
38	chr5:142594000-142599400	Weak transcription	HUVEC	blood vessel
39	chr5:142594000-142601600	Weak transcription	Cortex derived primary cultured neurospheres	brain
40	chr5:142594000-142601800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
41	chr5:142594000-142601800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
42	chr5:142594400-142597400	Genic enhancers	Primary monocytes fromperipheralblood	blood
43	chr5:142594400-142597400	Genic enhancers	Monocytes-CD14+_RO01746	blood
44	chr5:142594400-142598400	Strong transcription	Aorta	Aorta
45	chr5:142594400-142598400	Strong transcription	Right Ventricle	heart
46	chr5:142594400-142599000	Weak transcription	NHDF-Ad	bronchial
47	chr5:142594400-142599400	Weak transcription	Right Atrium	heart
48	chr5:142594400-142601800	Weak transcription	HUES6 Cell Line	embryonic stem cell
49	chr5:142594400-142608800	Weak transcription	HUES64 Cell Line	embryonic stem cell
50	chr5:142594400-142609600	Weak transcription	HUES48 Cell Line	embryonic stem cell

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