Variant report

Variant	rs11955803
Chromosome Location	chr5:142736966-142736967
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:142664010..142666464-chr5:142736050..142738721,2	K562	blood:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10482686	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11951777	1.00[AMR][1000 genomes]
rs73797552	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023976	chr5:142692062-142813664	Enhancers Flanking Active TSS Genic enhancers Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1033408	chr5:142701353-142738882	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv327858	chr5:142735069-142739490	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:86 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:142693800-142747400	Weak transcription	Fetal Muscle Trunk	muscle
2	chr5:142724400-142738000	Enhancers	Liver	Liver
3	chr5:142725000-142764200	Weak transcription	Lung	lung
4	chr5:142725200-142737000	Weak transcription	Fetal Intestine Small	intestine
5	chr5:142725400-142737200	Enhancers	Brain Cingulate Gyrus	brain
6	chr5:142727000-142737800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
7	chr5:142727600-142740200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr5:142732000-142737200	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr5:142732400-142737200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
10	chr5:142732400-142737600	Enhancers	NHLF	lung
11	chr5:142732600-142737200	Enhancers	Skeletal Muscle Male	skeletal muscle
12	chr5:142732600-142737400	Enhancers	Skeletal Muscle Female	skeletal muscle
13	chr5:142732800-142738000	Enhancers	Fetal Lung	lung
14	chr5:142733800-142742000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
15	chr5:142734000-142737200	Enhancers	Dnd41	blood
16	chr5:142734000-142737400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr5:142734000-142737400	Enhancers	Primary T killer memory cells from peripheral blood	blood
18	chr5:142734000-142737800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr5:142734000-142737800	Enhancers	Brain Anterior Caudate	brain
20	chr5:142734000-142738800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr5:142734000-142743000	Enhancers	Primary T helper naive cells from peripheral blood	blood
22	chr5:142734000-142756400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
23	chr5:142734200-142737800	Enhancers	GM12878-XiMat	blood
24	chr5:142734200-142739400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
25	chr5:142734200-142740400	Weak transcription	Stomach Smooth Muscle	stomach
26	chr5:142734200-142742200	Weak transcription	Sigmoid Colon	Sigmoid Colon
27	chr5:142734200-142743600	Enhancers	Primary T helper cells PMA-I stimulated	--
28	chr5:142734200-142743600	Enhancers	Primary T helper cells fromperipheralblood	blood
29	chr5:142734200-142754200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
30	chr5:142734400-142739000	Weak transcription	Thymus	Thymus
31	chr5:142734400-142739200	Weak transcription	Fetal Thymus	thymus
32	chr5:142734400-142740200	Weak transcription	Primary B cells from peripheral blood	blood
33	chr5:142734400-142741000	Weak transcription	Psoas Muscle	Psoas
34	chr5:142734800-142740200	Weak transcription	Right Ventricle	heart
35	chr5:142735200-142737000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr5:142735400-142740000	Weak transcription	HUES6 Cell Line	embryonic stem cell
37	chr5:142735600-142737000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr5:142735600-142737800	Enhancers	Brain Hippocampus Middle	brain
39	chr5:142735600-142739200	Weak transcription	Primary T cells fromperipheralblood	blood
40	chr5:142735600-142739200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
41	chr5:142735600-142739800	Weak transcription	Pancreatic Islets	Pancreatic Islet
42	chr5:142735600-142740000	Weak transcription	Duodenum Smooth Muscle	Duodenum
43	chr5:142735600-142740200	Weak transcription	Rectal Smooth Muscle	rectum
44	chr5:142735600-142742400	Weak transcription	Left Ventricle	heart
45	chr5:142735600-142743000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
46	chr5:142735600-142743600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
47	chr5:142735600-142743600	Weak transcription	HSMM	muscle
48	chr5:142735600-142743800	Weak transcription	Primary hematopoietic stem cells	blood
49	chr5:142735600-142756000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
50	chr5:142735800-142739200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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