Variant report

Variant	rs10482686
Chromosome Location	chr5:142677008-142677009
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11951777	1.00[AMR][1000 genomes]
rs11955803	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73797552	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1825941	chr5:142568715-142728031	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	esv33748	chr5:142638267-142699595	Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
3	nsv5041	chr5:142653189-142697896	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:109 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:142650600-142677200	Weak transcription	Aorta	Aorta
2	chr5:142655800-142677200	Weak transcription	Spleen	Spleen
3	chr5:142655800-142699200	Strong transcription	Dnd41	blood
4	chr5:142656000-142677400	Weak transcription	Gastric	stomach
5	chr5:142657800-142695400	Weak transcription	Pancreas	Pancrea
6	chr5:142658000-142679000	Weak transcription	Colonic Mucosa	Colon
7	chr5:142658200-142694800	Weak transcription	Right Ventricle	heart
8	chr5:142658400-142714800	Weak transcription	Esophagus	oesophagus
9	chr5:142658800-142677400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr5:142659400-142677200	Weak transcription	HSMMtube	muscle
11	chr5:142659600-142677400	Weak transcription	Ovary	ovary
12	chr5:142659800-142679400	Weak transcription	Small Intestine	intestine
13	chr5:142659800-142692600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
14	chr5:142661600-142677200	Weak transcription	HUVEC	blood vessel
15	chr5:142664000-142677400	Weak transcription	Brain Cingulate Gyrus	brain
16	chr5:142664000-142684600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr5:142664000-142685000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr5:142664400-142681200	Weak transcription	Pancreatic Islets	Pancreatic Islet
19	chr5:142664400-142693400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr5:142667200-142682000	Strong transcription	Primary T helper cells PMA-I stimulated	--
21	chr5:142667400-142688800	Strong transcription	Primary monocytes fromperipheralblood	blood
22	chr5:142667800-142681200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr5:142668000-142680200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
24	chr5:142668200-142680200	Strong transcription	Primary T helper cells fromperipheralblood	blood
25	chr5:142668600-142678400	Strong transcription	A549	lung
26	chr5:142668600-142680400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr5:142668600-142680800	Strong transcription	NHDF-Ad	bronchial
28	chr5:142668600-142688800	Strong transcription	Monocytes-CD14+_RO01746	blood
29	chr5:142668800-142678600	Weak transcription	Fetal Stomach	stomach
30	chr5:142668800-142682400	Strong transcription	GM12878-XiMat	blood
31	chr5:142668800-142693800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
32	chr5:142669000-142680800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr5:142669200-142680200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
34	chr5:142669400-142680400	Strong transcription	Osteobl	bone
35	chr5:142669600-142682600	Strong transcription	Primary B cells from peripheral blood	blood
36	chr5:142669800-142677200	Weak transcription	HUES6 Cell Line	embryonic stem cell
37	chr5:142669800-142680200	Strong transcription	Primary T cells from cord blood	blood
38	chr5:142669800-142680200	Strong transcription	Duodenum Mucosa	Duodenum
39	chr5:142669800-142680400	Strong transcription	Fetal Muscle Leg	muscle
40	chr5:142669800-142680400	Strong transcription	Fetal Thymus	thymus
41	chr5:142669800-142680400	Strong transcription	Thymus	Thymus
42	chr5:142669800-142680600	Strong transcription	Adipose Nuclei	Adipose
43	chr5:142669800-142681200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
44	chr5:142670000-142680200	Strong transcription	Fetal Muscle Trunk	muscle
45	chr5:142670000-142681800	Strong transcription	Primary B cells from cord blood	blood
46	chr5:142670000-142683600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr5:142670200-142680400	Strong transcription	Primary T cells fromperipheralblood	blood
48	chr5:142670200-142682200	Strong transcription	Liver	Liver
49	chr5:142670400-142677200	Weak transcription	Fetal Brain Male	brain
50	chr5:142670600-142680400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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