Variant report

Variant	rs10053531
Chromosome Location	chr5:97710487-97710488
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10042692	0.92[AFR][1000 genomes]
rs10043263	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10062866	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10066572	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10069881	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10074524	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10478072	0.84[AFR][1000 genomes]
rs10478078	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13436706	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs713068	1.00[AMR][1000 genomes]
rs7703823	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882407	chr5:97553255-97783046	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv882408	chr5:97616089-97836794	Enhancers Strong transcription ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv830419	chr5:97653713-97829079	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
4	nsv4928	chr5:97689980-97734899	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:97707200-97719200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr5:97709600-97710800	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr5:97710000-97710600	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr5:97710000-97711200	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr5:97710400-97710600	Enhancers	iPS-20b Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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