Variant report

Variant	rs10478078
Chromosome Location	chr5:97726054-97726055
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10043263	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10053531	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10062866	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10066572	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10069881	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10074524	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10478072	1.00[AFR][1000 genomes]
rs13436706	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs713068	1.00[AMR][1000 genomes]
rs7703823	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882407	chr5:97553255-97783046	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv882408	chr5:97616089-97836794	Enhancers Strong transcription ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv830419	chr5:97653713-97829079	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
4	nsv4928	chr5:97689980-97734899	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv1018555	chr5:97719032-97873906	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:97721400-97733600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr5:97721800-97727800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr5:97724400-97727400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr5:97725200-97727800	Enhancers	Stomach Mucosa	stomach
5	chr5:97725400-97726600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr5:97725400-97726800	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr5:97725600-97726600	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr5:97725600-97726800	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr5:97725800-97726200	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr5:97725800-97726800	Enhancers	iPS-15b Cell Line	embryonic stem cell
11	chr5:97725800-97727000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
12	chr5:97726000-97726600	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chr5:97726000-97727200	Enhancers	iPS-20b Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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