Variant report

Variant	rs100537
Chromosome Location	chr1:165413644-165413645
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1326379	0.81[ASN][1000 genomes]
rs157886	0.89[ASN][1000 genomes]
rs157887	0.96[ASN][1000 genomes]
rs192558	0.90[ASN][1000 genomes]
rs2194899	1.00[CHB][hapmap];0.97[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs285481	1.00[CHB][hapmap];0.92[CHD][hapmap];0.92[JPT][hapmap];0.89[ASN][1000 genomes]
rs41424948	0.93[ASW][hapmap];0.89[CEU][hapmap];0.84[TSI][hapmap]
rs878180	0.81[ASN][1000 genomes]

No data

Chromatin state (count:72 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:165412200-165414800	Active TSS	Pancreatic Islets	Pancreatic Islet
2	chr1:165412400-165414800	Active TSS	Brain Anterior Caudate	brain
3	chr1:165412600-165413800	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr1:165412600-165414000	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
5	chr1:165412600-165414000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr1:165412600-165414000	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr1:165412600-165414200	Bivalent Enhancer	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr1:165412600-165414200	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
9	chr1:165412800-165413800	Enhancers	Breast Myoepithelial Primary Cells	Breast
10	chr1:165412800-165413800	Bivalent Enhancer	Duodenum Mucosa	Duodenum
11	chr1:165412800-165413800	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
12	chr1:165412800-165414000	Bivalent/Poised TSS	Brain Dorsolateral Prefrontal Cortex	brain
13	chr1:165412800-165414000	Bivalent Enhancer	Colon Smooth Muscle	Colon
14	chr1:165412800-165414000	Enhancers	Left Ventricle	heart
15	chr1:165412800-165414400	Bivalent/Poised TSS	Rectal Mucosa Donor 29	rectum
16	chr1:165412800-165414600	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum
17	chr1:165412800-165414800	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr1:165412800-165414800	Active TSS	Brain Substantia Nigra	brain
19	chr1:165413000-165413800	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr1:165413000-165413800	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr1:165413000-165413800	Bivalent/Poised TSS	Fetal Brain Female	brain
22	chr1:165413000-165413800	Enhancers	Fetal Heart	heart
23	chr1:165413000-165413800	Weak transcription	Lung	lung
24	chr1:165413000-165414200	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
25	chr1:165413000-165414200	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
26	chr1:165413000-165414800	Active TSS	Brain Angular Gyrus	brain
27	chr1:165413200-165413800	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
28	chr1:165413200-165414000	Bivalent Enhancer	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr1:165413200-165414000	Bivalent Enhancer	Primary T helper naive cells fromperipheralblood	blood
30	chr1:165413200-165414000	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
31	chr1:165413200-165414000	Enhancers	Aorta	Aorta
32	chr1:165413200-165414000	Flanking Bivalent TSS/Enh	Brain Germinal Matrix	brain
33	chr1:165413200-165414000	Bivalent/Poised TSS	Fetal Kidney	kidney
34	chr1:165413200-165414000	Enhancers	Pancreas	Pancrea
35	chr1:165413200-165414200	Bivalent Enhancer	Primary T helper cells fromperipheralblood	blood
36	chr1:165413200-165414200	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
37	chr1:165413200-165414400	Active TSS	Right Ventricle	heart
38	chr1:165413200-165414600	Bivalent Enhancer	Primary T helper 17 cells PMA-I stimulated	--
39	chr1:165413200-165414600	Enhancers	Placenta	Placenta
40	chr1:165413200-165414800	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
41	chr1:165413200-165414800	Bivalent Enhancer	Primary B cells from peripheral blood	blood
42	chr1:165413200-165414800	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
43	chr1:165413400-165413800	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
44	chr1:165413400-165413800	Bivalent Enhancer	Primary T helper naive cells from peripheral blood	blood
45	chr1:165413400-165413800	Bivalent Enhancer	Primary T regulatory cells fromperipheralblood	blood
46	chr1:165413400-165413800	Active TSS	Brain Hippocampus Middle	brain
47	chr1:165413400-165413800	Active TSS	Skeletal Muscle Female	skeletal muscle
48	chr1:165413400-165414000	Bivalent Enhancer	Primary T killer memory cells from peripheral blood	blood
49	chr1:165413400-165414000	Weak transcription	Gastric	stomach
50	chr1:165413400-165414200	Flanking Bivalent TSS/Enh	HUES64 Cell Line	embryonic stem cell

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