Variant report

Variant	rs157887
Chromosome Location	chr1:165412106-165412107
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs100537	0.96[ASN][1000 genomes]
rs157886	0.97[AFR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs192558	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2194899	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs285481	0.87[AFR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:165398200-165412200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr1:165403800-165412400	Weak transcription	Brain Substantia Nigra	brain
3	chr1:165408400-165412400	Enhancers	Fetal Muscle Leg	muscle
4	chr1:165410200-165413000	Active TSS	Brain Germinal Matrix	brain
5	chr1:165411200-165412400	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr1:165411400-165412400	Weak transcription	Brain Anterior Caudate	brain
7	chr1:165411600-165412400	Weak transcription	Fetal Lung	lung
8	chr1:165411600-165412600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr1:165411600-165412600	Weak transcription	Lung	lung
10	chr1:165411600-165412800	Weak transcription	Psoas Muscle	Psoas
11	chr1:165411800-165412200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr1:165411800-165412200	Weak transcription	Fetal Muscle Trunk	muscle
13	chr1:165412000-165412200	Flanking Active TSS	Pancreatic Islets	Pancreatic Islet
14	chr1:165412000-165412200	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
15	chr1:165412000-165412800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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