Variant report

Variant	rs192558
Chromosome Location	chr1:165408986-165408987
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs100537	0.90[ASN][1000 genomes]
rs157886	0.81[AFR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs157887	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2194899	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs285481	0.89[AFR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:165398200-165412200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr1:165403400-165410600	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr1:165403800-165412400	Weak transcription	Brain Substantia Nigra	brain
4	chr1:165406400-165410200	Weak transcription	Brain Anterior Caudate	brain
5	chr1:165406600-165410400	Weak transcription	Psoas Muscle	Psoas
6	chr1:165407000-165410400	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr1:165408200-165409000	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
8	chr1:165408200-165409200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr1:165408200-165409200	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
10	chr1:165408400-165412400	Enhancers	Fetal Muscle Leg	muscle
11	chr1:165408600-165409000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr1:165408600-165409000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr1:165408600-165409000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
14	chr1:165408600-165409000	Active TSS	Brain Germinal Matrix	brain
15	chr1:165408600-165409000	Enhancers	Fetal Muscle Trunk	muscle
16	chr1:165408600-165409200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr1:165408600-165409200	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
18	chr1:165408600-165409200	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
19	chr1:165408600-165409400	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr1:165408600-165411600	Enhancers	Fetal Lung	lung
21	chr1:165408800-165409000	Enhancers	Fetal Kidney	kidney
22	chr1:165408800-165409000	Active TSS	Lung	lung
23	chr1:165408800-165409200	Enhancers	ES-I3 Cell Line	embryonic stem cell

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