Variant report

Variant	rs10053972
Chromosome Location	chr5:75582700-75582701
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs1393222	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34664047	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027368	chr5:74759999-75663712	Active TSS Strong transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv870415	chr5:75526088-75738412	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:75576000-75582800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr5:75576200-75583200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr5:75576800-75584800	Weak transcription	Gastric	stomach
4	chr5:75580400-75586000	Weak transcription	HMEC	breast
5	chr5:75580400-75586400	Weak transcription	Primary hematopoietic stem cells	blood
6	chr5:75580600-75584800	Weak transcription	Pancreas	Pancrea
7	chr5:75580600-75585000	Weak transcription	NHEK	skin
8	chr5:75580800-75586000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr5:75582600-75583600	Enhancers	Primary hematopoietic stem cells short term culture	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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