Variant report

Variant	rs1393222
Chromosome Location	chr5:75590805-75590806
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10053972	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1834886	0.86[JPT][hapmap];0.89[YRI][hapmap]
rs34664047	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3909796	0.82[JPT][hapmap]
rs4703705	0.82[JPT][hapmap];0.88[YRI][hapmap]
rs7732296	0.87[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027368	chr5:74759999-75663712	Active TSS Strong transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv870415	chr5:75526088-75738412	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:75585000-75593400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr5:75585000-75596000	Enhancers	Primary hematopoietic stem cells short term culture	blood
3	chr5:75586200-75592400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr5:75586400-75591400	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr5:75587400-75592200	Weak transcription	Liver	Liver
6	chr5:75587800-75591800	Enhancers	Primary hematopoietic stem cells	blood
7	chr5:75588200-75599800	Weak transcription	Pancreas	Pancrea
8	chr5:75588400-75599800	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr5:75589000-75593400	Weak transcription	Fetal Intestine Small	intestine
10	chr5:75589600-75591400	Enhancers	Fetal Thymus	thymus
11	chr5:75589600-75593200	Weak transcription	Duodenum Mucosa	Duodenum
12	chr5:75589800-75591200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
13	chr5:75590000-75593600	Weak transcription	Stomach Mucosa	stomach
14	chr5:75590600-75591000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
15	chr5:75590600-75591200	Enhancers	Primary B cells from cord blood	blood
16	chr5:75590600-75593200	Enhancers	iPS-15b Cell Line	embryonic stem cell
17	chr5:75590800-75595200	Weak transcription	GM12878-XiMat	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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