Variant report

Variant	rs34664047
Chromosome Location	chr5:75594457-75594458
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs10053972	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1393222	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027368	chr5:74759999-75663712	Active TSS Strong transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv870415	chr5:75526088-75738412	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:75585000-75596000	Enhancers	Primary hematopoietic stem cells short term culture	blood
2	chr5:75588200-75599800	Weak transcription	Pancreas	Pancrea
3	chr5:75588400-75599800	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr5:75590800-75595200	Weak transcription	GM12878-XiMat	blood
5	chr5:75591400-75594600	Weak transcription	Fetal Thymus	thymus
6	chr5:75591800-75597000	Weak transcription	Primary hematopoietic stem cells	blood
7	chr5:75593400-75595200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr5:75593400-75595600	Enhancers	Fetal Intestine Small	intestine
9	chr5:75593600-75595400	Enhancers	Stomach Mucosa	stomach
10	chr5:75593600-75602000	Enhancers	Liver	Liver
11	chr5:75593800-75595800	Enhancers	Primary T helper naive cells from peripheral blood	blood
12	chr5:75594000-75595800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
13	chr5:75594000-75595800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
14	chr5:75594000-75596400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
15	chr5:75594200-75595200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr5:75594200-75596200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
17	chr5:75594200-75600000	Weak transcription	Small Intestine	intestine
18	chr5:75594400-75595600	Enhancers	Duodenum Mucosa	Duodenum
19	chr5:75594400-75596400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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