Variant report
Variant | rs10054384 |
---|---|
Chromosome Location | chr5:50255677-50255678 |
allele | G/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:2 , 50 per page) page:
1
No data |
No data |
No data |
Variant related genes | Relation type |
---|---|
ENSG00000250360 | Chromatin interaction |
rs_ID | r2[population] |
---|---|
rs10472047 | 0.81[ASN][1000 genomes] |
rs16887696 | 1.00[ASN][1000 genomes] |
rs16888239 | 0.89[ASN][1000 genomes] |
rs185137 | 0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs250233 | 1.00[ASN][1000 genomes] |
rs250236 | 1.00[ASN][1000 genomes] |
rs250237 | 1.00[ASN][1000 genomes] |
rs3843453 | 0.81[YRI][hapmap] |
rs4626298 | 1.00[ASN][1000 genomes] |
rs5005508 | 1.00[ASN][1000 genomes] |
rs55833214 | 0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs6864779 | 0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs72758259 | 1.00[ASN][1000 genomes] |
rs72758263 | 1.00[ASN][1000 genomes] |
rs72758266 | 0.89[ASN][1000 genomes] |
rs73752801 | 0.89[ASN][1000 genomes] |
rs7703469 | 1.00[ASN][1000 genomes] |
rs7717928 | 0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs7725532 | 1.00[ASN][1000 genomes] |
rs7730386 | 1.00[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1034445 | chr5:49986171-50492609 | Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 16 gene(s) | inside rSNPs | diseases |
2 | nsv598116 | chr5:50064292-50318550 | Active TSS Bivalent/Poised TSS Strong transcription Weak transcription Bivalent Enhancer Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 11 gene(s) | inside rSNPs | diseases |
3 | nsv830286 | chr5:50165805-50374600 | Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr5:50255400-50258400 | Weak transcription | Pancreatic Islets | Pancreatic Islet |