Variant report

Variant	rs10472047
Chromosome Location	chr5:50254866-50254867
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10054384	0.81[ASN][1000 genomes]
rs1363846	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs16887696	0.81[ASN][1000 genomes]
rs185137	0.81[ASN][1000 genomes]
rs250230	0.85[CEU][hapmap];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs250233	0.82[CHB][hapmap];0.81[ASN][1000 genomes]
rs250236	0.81[ASN][1000 genomes]
rs250237	0.82[CHB][hapmap];0.88[CHD][hapmap];0.81[ASN][1000 genomes]
rs4626298	0.81[ASN][1000 genomes]
rs5005508	0.81[ASN][1000 genomes]
rs55833214	0.81[ASN][1000 genomes]
rs6864779	0.81[ASN][1000 genomes]
rs72758259	0.81[ASN][1000 genomes]
rs72758263	0.81[ASN][1000 genomes]
rs7703469	0.81[ASN][1000 genomes]
rs7717928	0.81[ASN][1000 genomes]
rs7725532	0.81[ASN][1000 genomes]
rs7730386	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034445	chr5:49986171-50492609	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv598116	chr5:50064292-50318550	Active TSS Bivalent/Poised TSS Strong transcription Weak transcription Bivalent Enhancer Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv830286	chr5:50165805-50374600	Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs10472047	SNX18	cis	parietal	SCAN
rs10472047	ARL15	cis	parietal	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:50253400-50255400	Enhancers	Pancreatic Islets	Pancreatic Islet
2	chr5:50254600-50255200	Enhancers	Adipose Nuclei	Adipose

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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