Variant report

Variant	rs185137
Chromosome Location	chr5:50261183-50261184
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10054384	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10472047	0.81[ASN][1000 genomes]
rs16887696	1.00[ASN][1000 genomes]
rs16888239	0.89[ASN][1000 genomes]
rs250233	0.89[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs250236	0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs250237	1.00[ASN][1000 genomes]
rs4626298	1.00[ASN][1000 genomes]
rs5005508	1.00[ASN][1000 genomes]
rs55833214	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6864779	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72758259	1.00[ASN][1000 genomes]
rs72758263	1.00[ASN][1000 genomes]
rs72758266	0.89[ASN][1000 genomes]
rs73752801	0.89[ASN][1000 genomes]
rs7703469	1.00[ASN][1000 genomes]
rs7717928	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7725532	1.00[ASN][1000 genomes]
rs7730386	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034445	chr5:49986171-50492609	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv598116	chr5:50064292-50318550	Active TSS Bivalent/Poised TSS Strong transcription Weak transcription Bivalent Enhancer Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv830286	chr5:50165805-50374600	Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:50258600-50261600	Active TSS	Stomach Smooth Muscle	stomach
2	chr5:50258600-50266600	Active TSS	Pancreatic Islets	Pancreatic Islet
3	chr5:50260200-50261400	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
4	chr5:50260200-50265000	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
5	chr5:50260400-50261800	Bivalent Enhancer	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr5:50260400-50261800	Weak transcription	Pancreas	Pancrea
7	chr5:50260400-50262000	Weak transcription	Right Atrium	heart
8	chr5:50260600-50261200	Bivalent Enhancer	Fetal Stomach	stomach
9	chr5:50260800-50261400	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
10	chr5:50261000-50261200	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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