Variant report

Variant	rs10055992
Chromosome Location	chr5:145194960-145194961
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:145190779..145192419-chr5:145193870..145195494,2	K562	blood:
2	chr5:145193021..145195050-chr5:145198336..145200436,2	K562	blood:

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10038866	1.00[AMR][1000 genomes]
rs10061116	1.00[AMR][1000 genomes]
rs10064503	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10069683	1.00[AMR][1000 genomes]
rs10070785	1.00[AMR][1000 genomes]
rs10071283	1.00[AMR][1000 genomes]
rs10155509	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10476876	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10476877	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12110135	1.00[AMR][1000 genomes]
rs13355847	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28377893	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28540454	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56354895	1.00[AMR][1000 genomes]
rs7708624	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7717428	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7721340	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7732260	1.00[AFR][1000 genomes]
rs7733916	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

No data

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:145158400-145196400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
2	chr5:145158400-145207000	Weak transcription	Esophagus	oesophagus
3	chr5:145162800-145198200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr5:145162800-145212800	Weak transcription	Rectal Smooth Muscle	rectum
5	chr5:145167400-145200600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr5:145168000-145203600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr5:145170200-145195400	Weak transcription	HepG2	liver
8	chr5:145170600-145213400	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr5:145172800-145196200	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr5:145172800-145214200	Weak transcription	Right Ventricle	heart
11	chr5:145174200-145209200	Weak transcription	Colon Smooth Muscle	Colon
12	chr5:145175200-145205000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr5:145177200-145206800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr5:145177200-145209000	Weak transcription	Muscle Satellite Cultured Cells	--
15	chr5:145177200-145209200	Weak transcription	NH-A	brain
16	chr5:145177400-145209000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr5:145179200-145207000	Weak transcription	Pancreas	Pancrea
18	chr5:145179400-145209400	Weak transcription	Stomach Mucosa	stomach
19	chr5:145182800-145207000	Weak transcription	Small Intestine	intestine
20	chr5:145183400-145197200	Weak transcription	HMEC	breast
21	chr5:145183600-145197400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr5:145183600-145214000	Weak transcription	Fetal Kidney	kidney
23	chr5:145183800-145195200	Weak transcription	Monocytes-CD14+_RO01746	blood
24	chr5:145185800-145202400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr5:145187000-145209200	Weak transcription	A549	lung
26	chr5:145187400-145197200	Weak transcription	Aorta	Aorta
27	chr5:145189200-145200000	Weak transcription	Osteobl	bone
28	chr5:145190200-145196600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr5:145191600-145199600	Weak transcription	Fetal Muscle Leg	muscle
30	chr5:145191600-145206400	Weak transcription	Liver	Liver
31	chr5:145191800-145196000	Weak transcription	K562	blood
32	chr5:145191800-145199800	Weak transcription	HUVEC	blood vessel
33	chr5:145192000-145196400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
34	chr5:145192000-145203600	Weak transcription	Adipose Nuclei	Adipose
35	chr5:145192400-145203600	Weak transcription	Left Ventricle	heart
36	chr5:145192800-145200600	Weak transcription	Lung	lung
37	chr5:145192800-145209200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
38	chr5:145193000-145204000	Weak transcription	Spleen	Spleen
39	chr5:145193200-145197400	Weak transcription	Fetal Heart	heart
40	chr5:145193800-145201400	Strong transcription	Rectal Mucosa Donor 31	rectum
41	chr5:145193800-145202000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
42	chr5:145194000-145196800	Strong transcription	Fetal Stomach	stomach
43	chr5:145194000-145197000	Strong transcription	Fetal Intestine Small	intestine
44	chr5:145194000-145199600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
45	chr5:145194000-145201000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
46	chr5:145194200-145195800	Strong transcription	Rectal Mucosa Donor 29	rectum
47	chr5:145194200-145196000	Strong transcription	Duodenum Mucosa	Duodenum
48	chr5:145194400-145195200	Strong transcription	Colonic Mucosa	Colon
49	chr5:145194400-145195400	Strong transcription	Stomach Smooth Muscle	stomach
50	chr5:145194400-145196200	Strong transcription	Gastric	stomach

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