Variant report

Variant	rs10155509
Chromosome Location	chr5:145170873-145170874
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:145166298..145168542-chr5:145169690..145172303,2	K562	blood:
2	chr5:145170210..145172928-chr5:145175134..145176770,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000186314	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10038866	1.00[AMR][1000 genomes]
rs10055992	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10061116	1.00[AMR][1000 genomes]
rs10064503	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10069683	1.00[AMR][1000 genomes]
rs10070785	1.00[AMR][1000 genomes]
rs10071283	1.00[AMR][1000 genomes]
rs10476876	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10476877	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12110135	1.00[AMR][1000 genomes]
rs13355847	1.00[AMR][1000 genomes]
rs28377893	1.00[AMR][1000 genomes]
rs28540454	1.00[AMR][1000 genomes]
rs56354895	1.00[AMR][1000 genomes]
rs7708624	1.00[AMR][1000 genomes]
rs7717428	1.00[AMR][1000 genomes]
rs7721340	1.00[AMR][1000 genomes]
rs7732260	0.91[AFR][1000 genomes]
rs7733916	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021851	chr5:145106686-145187560	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:145105400-145179000	Weak transcription	Pancreas	Pancrea
2	chr5:145109400-145194400	Weak transcription	Colonic Mucosa	Colon
3	chr5:145141200-145194400	Weak transcription	Stomach Smooth Muscle	stomach
4	chr5:145152200-145171000	Weak transcription	Stomach Mucosa	stomach
5	chr5:145156000-145171400	Weak transcription	Aorta	Aorta
6	chr5:145158400-145171400	Weak transcription	Fetal Stomach	stomach
7	chr5:145158400-145176800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr5:145158400-145177000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr5:145158400-145179000	Weak transcription	Gastric	stomach
10	chr5:145158400-145196400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
11	chr5:145158400-145207000	Weak transcription	Esophagus	oesophagus
12	chr5:145161000-145176600	Weak transcription	HUVEC	blood vessel
13	chr5:145161000-145183400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr5:145162800-145171400	Weak transcription	Lung	lung
15	chr5:145162800-145198200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr5:145162800-145212800	Weak transcription	Rectal Smooth Muscle	rectum
17	chr5:145164200-145172600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr5:145165800-145184800	Weak transcription	Duodenum Smooth Muscle	Duodenum
19	chr5:145166600-145174800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr5:145167000-145176800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr5:145167200-145171400	Weak transcription	Adipose Nuclei	Adipose
22	chr5:145167200-145172400	Weak transcription	HUES64 Cell Line	embryonic stem cell
23	chr5:145167200-145172400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
24	chr5:145167200-145185200	Weak transcription	K562	blood
25	chr5:145167400-145172400	Weak transcription	HUES6 Cell Line	embryonic stem cell
26	chr5:145167400-145174600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr5:145167400-145174800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr5:145167400-145176000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr5:145167400-145176800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
30	chr5:145167400-145200600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
31	chr5:145167600-145174800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr5:145167600-145176800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr5:145167800-145173800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
34	chr5:145167800-145179000	Weak transcription	Ovary	ovary
35	chr5:145167800-145191600	Weak transcription	Left Ventricle	heart
36	chr5:145167800-145194800	Weak transcription	Fetal Lung	lung
37	chr5:145168000-145183000	Weak transcription	Fetal Intestine Small	intestine
38	chr5:145168000-145203600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr5:145168200-145171800	Weak transcription	Sigmoid Colon	Sigmoid Colon
40	chr5:145168200-145176400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
41	chr5:145168200-145191200	Weak transcription	Fetal Heart	heart
42	chr5:145169400-145173000	Strong transcription	Duodenum Mucosa	Duodenum
43	chr5:145169600-145171800	Strong transcription	Rectal Mucosa Donor 31	rectum
44	chr5:145170000-145172000	Strong transcription	Fetal Intestine Large	intestine
45	chr5:145170000-145172600	Weak transcription	Fetal Kidney	kidney
46	chr5:145170000-145173600	Weak transcription	Rectal Mucosa Donor 29	rectum
47	chr5:145170200-145195400	Weak transcription	HepG2	liver
48	chr5:145170400-145171800	Strong transcription	Primary hematopoietic stem cells	blood
49	chr5:145170600-145213400	Weak transcription	Placenta Amnion	Placenta Amnion

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