Variant report
Variant | rs10056759 |
---|---|
Chromosome Location | chr5:118029141-118029142 |
allele | A/C |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
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No data |
No data |
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No data |
rs_ID | r2[population] |
---|---|
rs10070759 | 0.89[AMR][1000 genomes];0.93[EUR][1000 genomes] |
rs10071297 | 0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs11739738 | 0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs11740424 | 0.87[AMR][1000 genomes];0.93[EUR][1000 genomes] |
rs12513958 | 0.89[ASN][1000 genomes] |
rs12515064 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs12520595 | 0.84[ASN][1000 genomes] |
rs13184812 | 0.86[ASN][1000 genomes] |
rs1429710 | 0.85[ASN][1000 genomes] |
rs1429711 | 0.86[ASN][1000 genomes] |
rs1429719 | 0.85[AMR][1000 genomes];0.93[EUR][1000 genomes] |
rs1594243 | 0.86[ASN][1000 genomes] |
rs1864329 | 0.86[ASN][1000 genomes] |
rs2376682 | 0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs2376685 | 0.84[ASN][1000 genomes] |
rs2972224 | 0.85[ASN][1000 genomes] |
rs35097285 | 0.88[ASN][1000 genomes] |
rs36060260 | 0.85[ASN][1000 genomes] |
rs4362970 | 0.84[ASN][1000 genomes] |
rs4591779 | 0.84[ASN][1000 genomes] |
rs62370469 | 0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs6595159 | 0.87[ASN][1000 genomes] |
rs6874450 | 0.90[ASN][1000 genomes] |
rs6875045 | 0.88[ASN][1000 genomes] |
rs6883043 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs6891349 | 0.95[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs6892090 | 0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs6894241 | 0.82[AMR][1000 genomes];0.81[ASN][1000 genomes] |
rs6896169 | 0.88[ASN][1000 genomes] |
rs7705673 | 0.85[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1027428 | chr5:117072745-118036353 | Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 28 gene(s) | inside rSNPs | diseases |
2 | nsv537877 | chr5:117072745-118036353 | Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 28 gene(s) | inside rSNPs | diseases |
3 | nsv1067621 | chr5:117102544-118036352 | Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 28 gene(s) | inside rSNPs | diseases |
4 | nsv531292 | chr5:117102544-118036352 | Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 28 gene(s) | inside rSNPs | diseases |
5 | nsv599541 | chr5:117869174-118049776 | Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 16 gene(s) | inside rSNPs | diseases |
6 | nsv1027667 | chr5:117891559-118036578 | Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 13 gene(s) | inside rSNPs | diseases |
7 | nsv882766 | chr5:117893138-118032245 | Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 13 gene(s) | inside rSNPs | diseases |
8 | nsv1032241 | chr5:117900051-118157400 | Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 13 gene(s) | inside rSNPs | diseases |
9 | nsv882767 | chr5:117931730-118385691 | Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Enhancers Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 21 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr5:118027800-118029200 | Enhancers | Fetal Muscle Leg | muscle |
2 | chr5:118028400-118029200 | Enhancers | H9 Derived Neuronal Progenitor Cultured Cells | ES cell derived |
3 | chr5:118028400-118029200 | Enhancers | Breast Myoepithelial Primary Cells | Breast |
4 | chr5:118028400-118029200 | Enhancers | Left Ventricle | heart |
5 | chr5:118028800-118029200 | Enhancers | HUES6 Cell Line | embryonic stem cell |