Variant report

Variant	rs11739738
Chromosome Location	chr5:118040960-118040961
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:117072184..117074866-chr5:118040239..118042048,2	MCF-7	breast:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10056759	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10070759	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10071297	0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11740424	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12513958	0.90[ASN][1000 genomes]
rs12515064	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12520595	0.85[ASN][1000 genomes]
rs13184812	0.87[ASN][1000 genomes]
rs1429710	0.86[ASN][1000 genomes]
rs1429711	0.87[ASN][1000 genomes]
rs1429719	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1594243	0.87[ASN][1000 genomes]
rs1864329	0.87[ASN][1000 genomes]
rs2376682	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2376685	0.86[ASN][1000 genomes]
rs2972224	0.86[ASN][1000 genomes]
rs35097285	0.89[ASN][1000 genomes]
rs36060260	0.92[ASN][1000 genomes]
rs4362970	0.86[ASN][1000 genomes]
rs4591779	0.86[ASN][1000 genomes]
rs62370469	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6595159	0.92[ASN][1000 genomes]
rs6874450	0.89[ASN][1000 genomes]
rs6875045	0.89[ASN][1000 genomes]
rs6883043	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6891349	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6892090	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6894241	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6896169	0.89[ASN][1000 genomes]
rs7705673	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv599541	chr5:117869174-118049776	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv1032241	chr5:117900051-118157400	Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv882767	chr5:117931730-118385691	Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Enhancers Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:118040600-118042800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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