Variant report

Variant	rs36060260
Chromosome Location	chr5:118041568-118041569
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:117072184..117074866-chr5:118040239..118042048,2	MCF-7	breast:

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10056759	0.85[ASN][1000 genomes]
rs10071297	0.84[ASN][1000 genomes]
rs10463464	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10463702	0.93[EUR][1000 genomes]
rs11738540	0.84[EUR][1000 genomes]
rs11739738	0.92[ASN][1000 genomes]
rs11742138	0.89[EUR][1000 genomes]
rs12513958	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12515064	0.85[ASN][1000 genomes]
rs12519427	0.82[EUR][1000 genomes]
rs12520595	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12659643	0.90[EUR][1000 genomes]
rs13162843	0.90[EUR][1000 genomes]
rs13165356	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13184812	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1429710	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1429711	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1429712	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1594243	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1864329	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2376682	0.85[ASN][1000 genomes]
rs2376685	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2972224	0.92[ASN][1000 genomes]
rs34951891	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs35097285	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4362970	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4591779	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62370469	0.92[ASN][1000 genomes]
rs62372227	0.90[EUR][1000 genomes]
rs6595157	0.90[EUR][1000 genomes]
rs6595159	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6595160	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6860190	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6874450	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6875045	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6883043	0.88[ASN][1000 genomes]
rs6891349	0.88[ASN][1000 genomes]
rs6892090	0.88[ASN][1000 genomes]
rs6894241	0.81[ASN][1000 genomes]
rs6896169	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7703813	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7705673	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7728143	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv599541	chr5:117869174-118049776	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv1032241	chr5:117900051-118157400	Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv882767	chr5:117931730-118385691	Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Enhancers Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:118040600-118042800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr5:118041000-118042800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr5:118041000-118042800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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