Variant report

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10045497	0.81[CEU][hapmap]
rs10062361	0.88[ASN][1000 genomes]
rs10474433	0.80[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.81[MEX][hapmap];0.93[TSI][hapmap]
rs11749783	0.81[CEU][hapmap];0.89[GIH][hapmap]
rs12654264	0.81[CEU][hapmap];0.86[GIH][hapmap]
rs13356603	0.90[ASN][1000 genomes]
rs1551894	0.90[CHB][hapmap];0.84[CHD][hapmap];0.95[JPT][hapmap];0.89[ASN][1000 genomes]
rs2052515	0.90[ASN][1000 genomes]
rs2878417	0.85[CEU][hapmap]
rs3761743	0.87[CHD][hapmap];0.81[JPT][hapmap]
rs3843481	0.81[CEU][hapmap]
rs3846662	0.86[GIH][hapmap]
rs3857387	0.90[ASN][1000 genomes]
rs3857388	0.85[ASW][hapmap]
rs3931914	0.81[JPT][hapmap]
rs4703670	0.81[JPT][hapmap]
rs6878576	0.85[ASW][hapmap]
rs6878990	0.86[GIH][hapmap]
rs698912	0.87[CHD][hapmap]
rs72633961	0.89[ASN][1000 genomes]
rs72633962	0.81[ASN][1000 genomes]
rs7700468	0.87[CHD][hapmap];0.81[JPT][hapmap]
rs7701925	0.92[CHD][hapmap];0.81[JPT][hapmap]
rs7703051	0.81[CEU][hapmap];0.89[GIH][hapmap]
rs7709282	0.87[CHD][hapmap];0.81[JPT][hapmap]
rs7730609	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016610	chr5:74403611-74627654	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	esv2758000	chr5:74433760-74611714	Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	esv2759350	chr5:74433760-74611714	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs10056811	POC5	cis	parietal	SCAN
rs10056811	HMGCR	cis	cerebellum	SCAN
rs10056811	ARSB	cis	parietal	SCAN
rs10056811	HMGCR	cis	parietal	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:74602400-74606400	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr5:74602800-74607400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr5:74604000-74606400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

Quick Search: