Variant report

Variant	rs3843481
Chromosome Location	chr5:74628375-74628376
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:74626345..74628591-chr5:74631486..74633303,2	MCF-7	breast:
2	chr5:74606664..74608899-chr5:74628244..74629786,2	K562	blood:

Variant related genes	Relation type
ENSG00000247372	Chromatin interaction
ENSG00000113161	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10038095	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10045497	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10474433	0.81[CEU][hapmap]
rs11749783	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12654264	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12916	0.88[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17244834	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2878417	0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2878419	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3843480	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3843482	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3846661	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3846662	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3846663	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4549504	0.89[CEU][hapmap];0.90[CHB][hapmap];0.91[JPT][hapmap]
rs4604177	0.89[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs4704208	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4704210	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6453131	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6878990	0.85[CEU][hapmap];0.86[CHB][hapmap];0.90[JPT][hapmap];0.83[ASN][1000 genomes]
rs6882842	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6895057	0.80[AFR][1000 genomes]
rs7703051	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7733436	0.86[ASN][1000 genomes]

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:74619000-74631400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr5:74619400-74632200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr5:74621000-74632200	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr5:74621600-74631200	Weak transcription	A549	lung
5	chr5:74626000-74629200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr5:74626000-74631800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr5:74626400-74631400	Weak transcription	K562	blood
8	chr5:74626600-74628400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr5:74627000-74628400	Enhancers	Liver	Liver
10	chr5:74627000-74628400	Enhancers	Stomach Mucosa	stomach
11	chr5:74627600-74631400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr5:74627800-74631600	Weak transcription	Rectal Mucosa Donor 31	rectum
13	chr5:74628000-74631200	Weak transcription	Fetal Intestine Small	intestine
14	chr5:74628000-74631800	Weak transcription	Duodenum Mucosa	Duodenum
15	chr5:74628200-74628400	Flanking Active TSS	HepG2	liver
16	chr5:74628200-74629800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr5:74628200-74631200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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