Variant report

Variant	rs10038095
Chromosome Location	chr5:74637711-74637712
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	GATA3	chr5:74637706-74638267	MCF-7	breast:	n/a	chr5:74638113-74638125
2	POLR2A	chr5:74637591-74637963	MCF10A-Er-Src	breast:	n/a	n/a
3	POLR2A	chr5:74635404-74638705	K562	blood:	n/a	n/a
4	STAT3	chr5:74637385-74637755	MCF10A-Er-Src	breast:	n/a	chr5:74637562-74637573
5	STAT3	chr5:74637146-74637755	MCF10A-Er-Src	breast:	n/a	chr5:74637562-74637573
6	GATA3	chr5:74637618-74638287	MCF-7	breast:	n/a	chr5:74638113-74638125
7	POLR2A	chr5:74637638-74638023	HepG2	liver:	n/a	n/a
8	MAFF	chr5:74637596-74637784	K562	blood:	n/a	n/a
9	GATA3	chr5:74637692-74638286	SK-N-SH	brain:	n/a	chr5:74638113-74638125
10	FOS	chr5:74637199-74637788	MCF10A-Er-Src	breast:	n/a	chr5:74637623-74637637 chr5:74637304-74637316

No.	Distal block	Cell Line	Cell type
1	chr5:74631860..74634058-chr5:74635733..74638438,3	K562	blood:
2	chr5:74632279..74635542-chr5:74636579..74638658,4	K562	blood:
3	chr5:74631743..74634413-chr5:74635532..74638842,4	MCF-7	breast:
4	chr5:74634550..74639803-chr5:74643156..74647439,6	MCF-7	breast:
5	chr5:74635529..74638325-chr5:74638352..74640818,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000247372	TF binding region
ENSG00000247372	Chromatin interaction
ENSG00000113161	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10045497	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11749783	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12654264	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12916	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17244834	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2878417	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2878419	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3843480	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3843481	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3843482	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3846661	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3846662	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3846663	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4704208	0.85[ASN][1000 genomes]
rs4704210	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6453131	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6453133	0.81[ASN][1000 genomes]
rs6878990	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6882842	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6895057	0.81[AFR][1000 genomes]
rs7703051	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7733436	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:74632200-74638400	Active TSS	Fetal Adrenal Gland	Adrenal Gland
2	chr5:74633800-74638400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr5:74633800-74645800	Weak transcription	Gastric	stomach
4	chr5:74633800-74645800	Weak transcription	Spleen	Spleen
5	chr5:74633800-74650400	Weak transcription	Pancreas	Pancrea
6	chr5:74634000-74638800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr5:74634000-74640400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr5:74634000-74640400	Weak transcription	Left Ventricle	heart
9	chr5:74634200-74639200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr5:74634200-74641200	Weak transcription	Fetal Muscle Trunk	muscle
11	chr5:74634200-74641400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr5:74634400-74640400	Weak transcription	Lung	lung
13	chr5:74634400-74640400	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr5:74634400-74645400	Weak transcription	Psoas Muscle	Psoas
15	chr5:74634400-74645600	Weak transcription	Esophagus	oesophagus
16	chr5:74634400-74650800	Weak transcription	Aorta	Aorta
17	chr5:74634400-74652400	Weak transcription	Right Ventricle	heart
18	chr5:74634600-74639400	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr5:74634600-74640000	Weak transcription	Colonic Mucosa	Colon
20	chr5:74634600-74640000	Weak transcription	Colon Smooth Muscle	Colon
21	chr5:74634600-74640800	Weak transcription	Stomach Smooth Muscle	stomach
22	chr5:74634600-74642200	Weak transcription	Skeletal Muscle Male	skeletal muscle
23	chr5:74634600-74644200	Weak transcription	Rectal Smooth Muscle	rectum
24	chr5:74634800-74638000	Enhancers	Liver	Liver
25	chr5:74634800-74639600	Weak transcription	Rectal Mucosa Donor 31	rectum
26	chr5:74634800-74639600	Weak transcription	Osteobl	bone
27	chr5:74634800-74641200	Weak transcription	Brain Hippocampus Middle	brain
28	chr5:74634800-74641400	Weak transcription	Primary T cells from cord blood	blood
29	chr5:74634800-74641400	Weak transcription	Adipose Nuclei	Adipose
30	chr5:74634800-74641800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
31	chr5:74635000-74638200	Weak transcription	Fetal Thymus	thymus
32	chr5:74635000-74638400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr5:74635000-74638400	Weak transcription	Fetal Stomach	stomach
34	chr5:74635000-74638800	Weak transcription	Fetal Intestine Small	intestine
35	chr5:74635000-74639200	Enhancers	Muscle Satellite Cultured Cells	--
36	chr5:74635000-74639400	Weak transcription	Rectal Mucosa Donor 29	rectum
37	chr5:74635000-74639600	Weak transcription	Primary T cells fromperipheralblood	blood
38	chr5:74635000-74639800	Weak transcription	Primary B cells from peripheral blood	blood
39	chr5:74635000-74640400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr5:74635000-74640400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
41	chr5:74635000-74640400	Weak transcription	Duodenum Smooth Muscle	Duodenum
42	chr5:74635000-74640400	Weak transcription	Placenta Amnion	Placenta Amnion
43	chr5:74635000-74640400	Weak transcription	Thymus	Thymus
44	chr5:74635000-74641200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
45	chr5:74635000-74641200	Weak transcription	Brain Anterior Caudate	brain
46	chr5:74635000-74641200	Weak transcription	Skeletal Muscle Female	skeletal muscle
47	chr5:74635000-74641400	Weak transcription	Brain Cingulate Gyrus	brain
48	chr5:74635000-74641400	Weak transcription	Brain Substantia Nigra	brain
49	chr5:74635000-74641400	Weak transcription	Fetal Muscle Leg	muscle
50	chr5:74635000-74641600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links