Variant report

Variant	rs3846661
Chromosome Location	chr5:74639178-74639179
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:74638485..74641131-chr5:74648840..74652146,3	K562	blood:
2	chr5:74630501..74635424-chr5:74638636..74642776,5	K562	blood:
3	chr5:74638485..74640124-chr5:74648840..74650663,2	K562	blood:
4	chr5:74638395..74641765-chr5:74658081..74661333,3	K562	blood:
5	chr5:74635529..74638325-chr5:74638352..74640818,3	MCF-7	breast:
6	chr5:74634550..74639803-chr5:74643156..74647439,6	MCF-7	breast:

Variant related genes	Relation type
ENSG00000271815	Chromatin interaction
ENSG00000247372	Chromatin interaction
ENSG00000113161	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10038095	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10045497	0.86[EUR][1000 genomes]
rs11749783	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12654264	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12916	0.84[ASN][1000 genomes]
rs17244834	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2878419	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3843480	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3843481	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3843482	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3846662	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3846663	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4704210	0.84[EUR][1000 genomes]
rs6453131	0.88[EUR][1000 genomes]
rs6878990	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6882842	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7703051	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7733436	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:74633800-74645800	Weak transcription	Gastric	stomach
2	chr5:74633800-74645800	Weak transcription	Spleen	Spleen
3	chr5:74633800-74650400	Weak transcription	Pancreas	Pancrea
4	chr5:74634000-74640400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr5:74634000-74640400	Weak transcription	Left Ventricle	heart
6	chr5:74634200-74639200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr5:74634200-74641200	Weak transcription	Fetal Muscle Trunk	muscle
8	chr5:74634200-74641400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr5:74634400-74640400	Weak transcription	Lung	lung
10	chr5:74634400-74640400	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr5:74634400-74645400	Weak transcription	Psoas Muscle	Psoas
12	chr5:74634400-74645600	Weak transcription	Esophagus	oesophagus
13	chr5:74634400-74650800	Weak transcription	Aorta	Aorta
14	chr5:74634400-74652400	Weak transcription	Right Ventricle	heart
15	chr5:74634600-74639400	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr5:74634600-74640000	Weak transcription	Colonic Mucosa	Colon
17	chr5:74634600-74640000	Weak transcription	Colon Smooth Muscle	Colon
18	chr5:74634600-74640800	Weak transcription	Stomach Smooth Muscle	stomach
19	chr5:74634600-74642200	Weak transcription	Skeletal Muscle Male	skeletal muscle
20	chr5:74634600-74644200	Weak transcription	Rectal Smooth Muscle	rectum
21	chr5:74634800-74639600	Weak transcription	Rectal Mucosa Donor 31	rectum
22	chr5:74634800-74639600	Weak transcription	Osteobl	bone
23	chr5:74634800-74641200	Weak transcription	Brain Hippocampus Middle	brain
24	chr5:74634800-74641400	Weak transcription	Primary T cells from cord blood	blood
25	chr5:74634800-74641400	Weak transcription	Adipose Nuclei	Adipose
26	chr5:74634800-74641800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
27	chr5:74635000-74639200	Enhancers	Muscle Satellite Cultured Cells	--
28	chr5:74635000-74639400	Weak transcription	Rectal Mucosa Donor 29	rectum
29	chr5:74635000-74639600	Weak transcription	Primary T cells fromperipheralblood	blood
30	chr5:74635000-74639800	Weak transcription	Primary B cells from peripheral blood	blood
31	chr5:74635000-74640400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr5:74635000-74640400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
33	chr5:74635000-74640400	Weak transcription	Duodenum Smooth Muscle	Duodenum
34	chr5:74635000-74640400	Weak transcription	Placenta Amnion	Placenta Amnion
35	chr5:74635000-74640400	Weak transcription	Thymus	Thymus
36	chr5:74635000-74641200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
37	chr5:74635000-74641200	Weak transcription	Brain Anterior Caudate	brain
38	chr5:74635000-74641200	Weak transcription	Skeletal Muscle Female	skeletal muscle
39	chr5:74635000-74641400	Weak transcription	Brain Cingulate Gyrus	brain
40	chr5:74635000-74641400	Weak transcription	Brain Substantia Nigra	brain
41	chr5:74635000-74641400	Weak transcription	Fetal Muscle Leg	muscle
42	chr5:74635000-74641600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
43	chr5:74635000-74641800	Weak transcription	Primary hematopoietic stem cells	blood
44	chr5:74635000-74643000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
45	chr5:74635000-74644200	Weak transcription	Brain Angular Gyrus	brain
46	chr5:74635000-74645200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
47	chr5:74635000-74652600	Weak transcription	Fetal Heart	heart
48	chr5:74635200-74639600	Weak transcription	Placenta	Placenta
49	chr5:74635200-74639800	Weak transcription	Primary B cells from cord blood	blood
50	chr5:74635200-74641600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood

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