Variant report

Variant	rs2878419
Chromosome Location	chr5:74640490-74640491
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:74638485..74641131-chr5:74648840..74652146,3	K562	blood:
2	chr5:74630501..74635424-chr5:74638636..74642776,5	K562	blood:
3	chr5:74638395..74641765-chr5:74658081..74661333,3	K562	blood:
4	chr5:74635529..74638325-chr5:74638352..74640818,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000271815	Chromatin interaction
ENSG00000247372	Chromatin interaction
ENSG00000113161	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10038095	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10045497	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11749783	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12654264	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12916	0.92[AFR][1000 genomes];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17244834	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2878417	0.86[ASN][1000 genomes]
rs3843480	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3843481	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3843482	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3846661	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3846662	0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3846663	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4704208	0.85[ASN][1000 genomes]
rs4704210	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6453131	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6453133	0.81[ASN][1000 genomes]
rs6878990	0.85[ASN][1000 genomes]
rs6882842	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7703051	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7733436	0.88[ASN][1000 genomes]

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:74633800-74645800	Weak transcription	Gastric	stomach
2	chr5:74633800-74645800	Weak transcription	Spleen	Spleen
3	chr5:74633800-74650400	Weak transcription	Pancreas	Pancrea
4	chr5:74634200-74641200	Weak transcription	Fetal Muscle Trunk	muscle
5	chr5:74634200-74641400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr5:74634400-74645400	Weak transcription	Psoas Muscle	Psoas
7	chr5:74634400-74645600	Weak transcription	Esophagus	oesophagus
8	chr5:74634400-74650800	Weak transcription	Aorta	Aorta
9	chr5:74634400-74652400	Weak transcription	Right Ventricle	heart
10	chr5:74634600-74640800	Weak transcription	Stomach Smooth Muscle	stomach
11	chr5:74634600-74642200	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chr5:74634600-74644200	Weak transcription	Rectal Smooth Muscle	rectum
13	chr5:74634800-74641200	Weak transcription	Brain Hippocampus Middle	brain
14	chr5:74634800-74641400	Weak transcription	Primary T cells from cord blood	blood
15	chr5:74634800-74641400	Weak transcription	Adipose Nuclei	Adipose
16	chr5:74634800-74641800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
17	chr5:74635000-74641200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
18	chr5:74635000-74641200	Weak transcription	Brain Anterior Caudate	brain
19	chr5:74635000-74641200	Weak transcription	Skeletal Muscle Female	skeletal muscle
20	chr5:74635000-74641400	Weak transcription	Brain Cingulate Gyrus	brain
21	chr5:74635000-74641400	Weak transcription	Brain Substantia Nigra	brain
22	chr5:74635000-74641400	Weak transcription	Fetal Muscle Leg	muscle
23	chr5:74635000-74641600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
24	chr5:74635000-74641800	Weak transcription	Primary hematopoietic stem cells	blood
25	chr5:74635000-74643000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
26	chr5:74635000-74644200	Weak transcription	Brain Angular Gyrus	brain
27	chr5:74635000-74645200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
28	chr5:74635000-74652600	Weak transcription	Fetal Heart	heart
29	chr5:74635200-74641600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
30	chr5:74635600-74659600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
31	chr5:74635800-74641600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
32	chr5:74635800-74641600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
33	chr5:74635800-74641800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
34	chr5:74635800-74641800	Weak transcription	Fetal Lung	lung
35	chr5:74635800-74644400	Weak transcription	Ovary	ovary
36	chr5:74635800-74645400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr5:74635800-74646000	Weak transcription	Small Intestine	intestine
38	chr5:74636000-74640800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
39	chr5:74636400-74643400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
40	chr5:74636400-74645400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
41	chr5:74636600-74641400	Weak transcription	Fetal Brain Male	brain
42	chr5:74636600-74641600	Weak transcription	Brain Germinal Matrix	brain
43	chr5:74636800-74640800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
44	chr5:74636800-74641800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
45	chr5:74636800-74645800	Weak transcription	Stomach Mucosa	stomach
46	chr5:74636800-74649200	Strong transcription	K562	blood
47	chr5:74636800-74659200	Strong transcription	HUES48 Cell Line	embryonic stem cell
48	chr5:74637200-74655800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
49	chr5:74637200-74659600	Strong transcription	HUES64 Cell Line	embryonic stem cell
50	chr5:74637400-74641400	Weak transcription	iPS-15b Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links