Variant report

Variant	rs6895057
Chromosome Location	chr5:74624234-74624235
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10038095	0.81[AFR][1000 genomes]
rs11749783	0.80[AFR][1000 genomes]
rs3843480	0.80[AFR][1000 genomes]
rs3843481	0.80[AFR][1000 genomes]
rs7703051	0.80[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016610	chr5:74403611-74627654	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:74617200-74626000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr5:74619000-74631400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr5:74619400-74632200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr5:74621000-74632200	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr5:74621200-74625000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr5:74621600-74631200	Weak transcription	A549	lung
7	chr5:74621800-74627000	Weak transcription	Liver	Liver
8	chr5:74623600-74624800	Weak transcription	HepG2	liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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