Variant report

Variant	rs10058060
Chromosome Location	chr5:151301127-151301128
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10052795	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10072473	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10477005	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17112418	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2216641	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28565939	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28579965	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28597369	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59369689	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6579914	1.00[ASN][1000 genomes]
rs6878033	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73794394	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531994	chr5:151292664-151331097	Bivalent/Poised TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:151299200-151305800	Active TSS	Pancreatic Islets	Pancreatic Islet

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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