Variant report

Variant	rs2216641
Chromosome Location	chr5:151325120-151325121
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10052795	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10058060	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10072473	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10477005	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13361115	1.00[CEU][hapmap]
rs17112418	1.00[CEU][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28565939	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28579965	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28597369	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59369689	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6579914	1.00[ASN][1000 genomes]
rs6878033	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73794394	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531994	chr5:151292664-151331097	Bivalent/Poised TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:151324000-151331600	Weak transcription	Right Atrium	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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