Variant report

Variant	rs1005968
Chromosome Location	chr10:116463434-116463435
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:116310194..116311025-chr10:116463074..116463657,3	MCF-7	breast:
2	chr10:116463343..116464122-chr10:116545816..116546627,2	MCF-7	breast:
3	chr10:116310252..116311787-chr10:116463124..116463956,6	MCF-7	breast:

Extended variants
information (count: 34 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs1109267	0.80[GIH][hapmap]
rs11196828	0.80[GIH][hapmap]
rs11196843	0.82[GIH][hapmap]
rs11196860	0.83[EUR][1000 genomes]
rs11196879	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11593135	0.92[CEU][hapmap];0.84[EUR][1000 genomes]
rs11597188	0.89[CEU][hapmap];1.00[GIH][hapmap];0.93[TSI][hapmap];0.83[EUR][1000 genomes]
rs11598354	0.81[ASN][1000 genomes]
rs12570718	0.87[GIH][hapmap]
rs12761207	0.81[ASN][1000 genomes]
rs12761991	0.81[ASN][1000 genomes]
rs12774401	0.81[ASN][1000 genomes]
rs12783562	0.81[ASN][1000 genomes]
rs17720374	0.81[ASN][1000 genomes]
rs17793192	0.89[CEU][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17794002	1.00[CHB][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap]
rs34210195	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35221652	0.81[ASN][1000 genomes]
rs35736355	0.81[ASN][1000 genomes]
rs35927479	0.81[ASN][1000 genomes]
rs36021781	0.81[ASN][1000 genomes]
rs4568917	0.87[GIH][hapmap]
rs4752099	0.89[CEU][hapmap];1.00[GIH][hapmap];0.93[TSI][hapmap];0.83[EUR][1000 genomes]
rs719894	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs808325	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037308	chr10:116141946-116519765	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv540780	chr10:116141946-116519765	Enhancers Genic enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv949138	chr10:116311531-116874477	Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
4	nsv1038050	chr10:116315109-116895719	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
5	nsv533027	chr10:116344641-116856352	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
6	esv3435429	chr10:116394152-117006347	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
7	nsv1042170	chr10:116455043-116504871	Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	nsv1046888	chr10:116455043-116505640	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	nsv1038822	chr10:116455647-116497204	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs1005968	ABLIM1	cis	parietal	SCAN
rs1005968	TRUB1	cis	cerebellum	SCAN

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:116451200-116464600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr10:116457400-116466200	Weak transcription	Adipose Nuclei	Adipose
3	chr10:116457400-116468000	Weak transcription	A549	lung
4	chr10:116457400-116468200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr10:116458600-116465400	Weak transcription	Hela-S3	cervix
6	chr10:116458600-116467000	Weak transcription	Right Atrium	heart
7	chr10:116458800-116463600	Weak transcription	Fetal Heart	heart
8	chr10:116462600-116464200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
9	chr10:116463400-116463800	Enhancers	Breast Myoepithelial Primary Cells	Breast
10	chr10:116463400-116463800	Enhancers	Skeletal Muscle Male	skeletal muscle

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