Variant report

Variant	rs35927479
Chromosome Location	chr10:116483795-116483796
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:116481771..116484398-chr10:116487848..116490311,3	MCF-7	breast:
2	chr10:116475010..116479006-chr10:116480936..116484073,4	MCF-7	breast:
3	chr10:116471677..116474486-chr10:116483195..116484709,2	MCF-7	breast:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs1005968	0.81[ASN][1000 genomes]
rs11598354	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12761207	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12761991	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12763449	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12763784	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12767625	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12774401	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12783562	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12785140	0.81[EUR][1000 genomes]
rs17720374	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17794002	0.88[ASN][1000 genomes]
rs34202625	0.88[ASN][1000 genomes]
rs34751270	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs35221652	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35736355	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36021781	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55633935	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs58719367	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs61870569	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7073405	0.81[EUR][1000 genomes]
rs7080890	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7092145	0.84[ASN][1000 genomes]
rs719894	0.92[ASN][1000 genomes]
rs7902647	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7919367	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7922771	0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs808325	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037308	chr10:116141946-116519765	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv540780	chr10:116141946-116519765	Enhancers Genic enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv949138	chr10:116311531-116874477	Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
4	nsv1038050	chr10:116315109-116895719	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
5	nsv533027	chr10:116344641-116856352	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
6	esv3435429	chr10:116394152-117006347	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
7	nsv1042170	chr10:116455043-116504871	Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	nsv1046888	chr10:116455043-116505640	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	nsv1038822	chr10:116455647-116497204	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:116474400-116486200	Weak transcription	Lung	lung
2	chr10:116475600-116484600	Enhancers	Adipose Nuclei	Adipose
3	chr10:116476600-116484800	Enhancers	Liver	Liver
4	chr10:116477400-116486200	Weak transcription	Right Ventricle	heart
5	chr10:116478800-116484600	Enhancers	Stomach Mucosa	stomach
6	chr10:116480400-116484600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr10:116480400-116485400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr10:116481200-116485600	Weak transcription	Pancreas	Pancrea
9	chr10:116481400-116485200	Enhancers	Fetal Heart	heart
10	chr10:116482200-116487000	Enhancers	Breast Myoepithelial Primary Cells	Breast
11	chr10:116482400-116484000	Enhancers	Hela-S3	cervix
12	chr10:116482400-116484800	Enhancers	Primary hematopoietic stem cells	blood
13	chr10:116482400-116484800	Enhancers	Placenta	Placenta
14	chr10:116482600-116484200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
15	chr10:116482800-116488600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr10:116483400-116484000	Weak transcription	Brain Cingulate Gyrus	brain
17	chr10:116483400-116484600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr10:116483400-116484800	Enhancers	HMEC	breast
19	chr10:116483400-116486200	Weak transcription	Gastric	stomach
20	chr10:116483400-116493800	Weak transcription	Right Atrium	heart
21	chr10:116483600-116484000	Weak transcription	Left Ventricle	heart
22	chr10:116483600-116484200	Enhancers	A549	lung

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