Variant report

Variant	rs7902647
Chromosome Location	chr10:116526571-116526572
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:116526447..116528712-chr10:116580718..116582885,3	MCF-7	breast:
2	chr10:116510537..116513350-chr10:116526093..116528633,2	MCF-7	breast:
3	chr10:116483992..116485637-chr10:116525925..116527534,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000151553	Chromatin interaction

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs11593472	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11598354	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12761207	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12761991	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12763449	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12763784	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12767625	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12767713	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12774401	0.83[EUR][1000 genomes]
rs12783562	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12785140	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17720374	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17794002	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34105246	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34202625	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34366626	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34751270	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35221652	0.83[EUR][1000 genomes]
rs35736355	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35927479	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs36021781	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs55633935	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58719367	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs59254826	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61870569	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7073405	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7075095	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7080890	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7082250	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7092145	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs719894	0.88[ASN][1000 genomes]
rs7919367	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7922771	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs808325	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949138	chr10:116311531-116874477	Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv1038050	chr10:116315109-116895719	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
3	nsv533027	chr10:116344641-116856352	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
4	esv3435429	chr10:116394152-117006347	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
5	esv1814163	chr10:116519705-116582581	Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:116513800-116527000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr10:116515000-116527400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr10:116525600-116528400	Active TSS	Right Atrium	heart
4	chr10:116526000-116526600	Flanking Active TSS	Fetal Heart	heart
5	chr10:116526000-116527000	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
6	chr10:116526000-116527400	Active TSS	Psoas Muscle	Psoas
7	chr10:116526200-116526600	Flanking Active TSS	Left Ventricle	heart
8	chr10:116526200-116526600	Enhancers	Pancreas	Pancrea
9	chr10:116526200-116526600	Bivalent/Poised TSS	Rectal Mucosa Donor 31	rectum
10	chr10:116526200-116526600	Enhancers	Hela-S3	cervix
11	chr10:116526200-116526600	Enhancers	NHEK	skin
12	chr10:116526200-116526800	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
13	chr10:116526200-116527000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
14	chr10:116526200-116527000	Bivalent/Poised TSS	Brain Hippocampus Middle	brain
15	chr10:116526200-116527000	Flanking Active TSS	Pancreatic Islets	Pancreatic Islet
16	chr10:116526200-116527000	Enhancers	Stomach Mucosa	stomach
17	chr10:116526200-116527200	Enhancers	Liver	Liver
18	chr10:116526200-116527400	Bivalent/Poised TSS	Skeletal Muscle Male	skeletal muscle
19	chr10:116526200-116527600	Bivalent/Poised TSS	Brain Cingulate Gyrus	brain
20	chr10:116526200-116528200	Active TSS	Fetal Intestine Small	intestine
21	chr10:116526200-116528600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
22	chr10:116526200-116528600	Active TSS	Right Ventricle	heart
23	chr10:116526400-116526600	Enhancers	Primary T killer memory cells from peripheral blood	blood
24	chr10:116526400-116526600	Active TSS	Adipose Nuclei	Adipose
25	chr10:116526400-116526600	Flanking Bivalent TSS/Enh	Brain Inferior Temporal Lobe	brain
26	chr10:116526400-116526600	Active TSS	Duodenum Mucosa	Duodenum
27	chr10:116526400-116526600	Flanking Bivalent TSS/Enh	Fetal Brain Female	brain
28	chr10:116526400-116526600	Flanking Bivalent TSS/Enh	Fetal Lung	lung
29	chr10:116526400-116526600	Active TSS	Rectal Smooth Muscle	rectum
30	chr10:116526400-116526800	Enhancers	H1 Cell Line	embryonic stem cell
31	chr10:116526400-116526800	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
32	chr10:116526400-116526800	Bivalent Enhancer	Primary T cells from cord blood	blood
33	chr10:116526400-116526800	Bivalent/Poised TSS	Brain Angular Gyrus	brain
34	chr10:116526400-116526800	Flanking Active TSS	Brain Anterior Caudate	brain
35	chr10:116526400-116526800	Flanking Bivalent TSS/Enh	Fetal Kidney	kidney
36	chr10:116526400-116526800	Flanking Bivalent TSS/Enh	Rectal Mucosa Donor 29	rectum
37	chr10:116526400-116526800	Enhancers	HMEC	breast
38	chr10:116526400-116527000	Enhancers	H9 Cell Line	embryonic stem cell
39	chr10:116526400-116527000	Enhancers	Primary hematopoietic stem cells	blood
40	chr10:116526400-116527000	Enhancers	Primary hematopoietic stem cells short term culture	blood
41	chr10:116526400-116527000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr10:116526400-116527000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr10:116526400-116527000	Enhancers	A549	lung
44	chr10:116526400-116527200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
45	chr10:116526400-116527200	Bivalent Enhancer	Primary T helper naive cells from peripheral blood	blood
46	chr10:116526400-116527200	Active TSS	Fetal Intestine Large	intestine
47	chr10:116526400-116527600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
48	chr10:116526400-116527600	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum
49	chr10:116526400-116527600	Bivalent/Poised TSS	Fetal Brain Male	brain
50	chr10:116526400-116527800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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