Variant report

Variant	rs34366626
Chromosome Location	chr10:116561157-116561158
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11593472	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12763449	0.88[ASN][1000 genomes]
rs12763784	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12767625	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12767713	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12785140	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17794002	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34105246	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34202625	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34751270	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs55633935	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs58719367	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59254826	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61870569	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7073405	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7075095	0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7080890	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7082250	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7092145	0.80[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7902647	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7919367	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7922771	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949138	chr10:116311531-116874477	Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv1038050	chr10:116315109-116895719	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
3	nsv533027	chr10:116344641-116856352	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
4	esv3435429	chr10:116394152-117006347	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
5	esv1814163	chr10:116519705-116582581	Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:116556800-116566400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr10:116556800-116572800	Weak transcription	Pancreas	Pancrea
3	chr10:116559400-116561200	Enhancers	Primary hematopoietic stem cells	blood
4	chr10:116559400-116561800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr10:116560000-116561800	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
6	chr10:116560200-116561800	Flanking Active TSS	Dnd41	blood
7	chr10:116560200-116562200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr10:116560400-116561600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr10:116560600-116562400	Enhancers	Primary T cells from cord blood	blood
10	chr10:116560600-116562600	Enhancers	Primary T killer memory cells from peripheral blood	blood
11	chr10:116560600-116566000	Weak transcription	Hela-S3	cervix
12	chr10:116560800-116561200	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
13	chr10:116560800-116561600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr10:116560800-116561600	Flanking Active TSS	Primary T cells fromperipheralblood	blood
15	chr10:116560800-116561600	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
16	chr10:116560800-116561600	Flanking Active TSS	Thymus	Thymus
17	chr10:116560800-116561600	Flanking Active TSS	GM12878-XiMat	blood
18	chr10:116560800-116562000	Enhancers	Primary T helper naive cells from peripheral blood	blood
19	chr10:116560800-116562200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
20	chr10:116560800-116562200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
21	chr10:116561000-116561200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
22	chr10:116561000-116561400	Enhancers	Primary B cells from peripheral blood	blood
23	chr10:116561000-116561400	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
24	chr10:116561000-116561400	Flanking Active TSS	Fetal Thymus	thymus
25	chr10:116561000-116561600	Enhancers	Primary neutrophils fromperipheralblood	blood
26	chr10:116561000-116561600	Enhancers	Primary T helper cells fromperipheralblood	blood
27	chr10:116561000-116561600	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
28	chr10:116561000-116561600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr10:116561000-116561600	Enhancers	Muscle Satellite Cultured Cells	--
30	chr10:116561000-116561600	Enhancers	HMEC	breast

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